TABLE 3.
Information for the metagenome-assembled genomes (MAGs) and single-cell amplified genomes (SAGs) analyzed in this paper.
| Clade | ID | NCBI BioProject (BioSample) | Completeness (%) | Contamination (%) | References |
| UBA1414 | Baltic Sea_59E_21H_M23 | PRJNA417388a | 54.7 | 1.4 | Bird et al., 2019 |
| Baltic Sea_59E_21H_O21 | PRJNA417388a | 52.5 | 1.4 | Bird et al., 2019 | |
| Baltic Sea_60B_13H_A10 | PRJNA417388a | 69.8 | 2.9 | Bird et al., 2019 | |
| Baltic Sea_60B_13H_C09 | PRJNA417388a | 71.9 | 1.4 | Bird et al., 2019 | |
| GCA_001767735_Rifle_CO | PRJNA288027 | 63.3 | 2.9 | Anantharaman et al., 2016 | |
| (SAMN04314056) | |||||
| Hakuba_co-assemblyb | PRJDB8357 | 93.5 | 6.5 | This study | |
| RBG-13-55-18 | GCA_001767755_Rifle_CO | PRJNA288027 | 60.4 | 0.0 | Anantharaman et al., 2016 |
| (SAMN04313673) | |||||
| GCA_001768645_Rifle_CO | PRJNA288027 | 97.1 | 0.7 | Anantharaman et al., 2016 | |
| (SAMN04313996) | |||||
| GCA_001767605_Rifle_CO | PRJNA288027 | 97.8 | 0.0 | Anantharaman et al., 2016 | |
| (SAMN04313722) | |||||
| SURF_21 | PRJNA355136c | 89.2 | 0.7 | Momper et al., 2017 | |
| UBA9087 | GCA_001767575_Rifle_CO | PRJNA288027 | 78.4 | 1.4 | Anantharaman et al., 2016 |
| (SAMN04314195) | |||||
| GCA_001871795_Crystal_Geyser | PRJNA297582 | 95.7 | 0.7 | Burstein et al., 2016 | |
| (SAMN04328288) |
Completeness and contamination were determined by Anvi’o marker gene-based approach (Eren et al., 2015). a The cleaned genome assemblies were provided by Dr. Karen Lloyd. bThe highest quality Hakuba SAG S34 has 92.8% completeness and 1.4% contamination. c The cleaned genome assemblies were obtained from the data depository referenced in Momper et al. (2017).