TABLE 3.

List of the genes related to phenotype between BAA894 and pmrA mutant in pH 5.0.

gene ID	5.0WT RPKM	5.0pmrA RPKM	Fold change	P value	Level
pmrA	90.13	0.00	0.00	P < 0.01	Down
pmrB	107.56	47.24	0.44	P < 0.01	Down
phoP	286.85	313.69	1.09	P < 0.01	Up
phoQ	175.54	134.05	0.76	P < 0.01	Down
eptA	158.65	184.59	1.16	P < 0.01	Up
eptB	425.35	334.12	0.79	P < 0.01	Down
pagP	145.53	132.29	0.91	P < 0.01	Down
lpxA	458.78	449.40	0.98	P < 0.01	Down
cpxA	224.27	141.26	0.63	P < 0.01	Down
cpxR	634.07	536.28	0.85	P < 0.01	Down
marA	29.74	22.07	0.74	P < 0.01	Down
acrA	382.12	377.03	0.99	P < 0.01	Down
acrB	228.82	210.03	0.92	P < 0.01	Down
tolC	315.09	316.41	1.00	P < 0.01	Up
ramA	87.80	74.79	0.85	P < 0.01	Down
ompF	7971.55	8755.51	1.10	P < 0.01	Up
phoE	58.84	80.38	1.37	P < 0.01	Up
ompC	11281.95	17012.45	1.51	P < 0.01	Up
ESA_RS01970	743.76	818.06	1.10	P < 0.01	Up
ESA_RS03645	61.54	131.54	2.14	P < 0.01	Up
ESA_RS08640	172.73	314.67	1.82	P < 0.01	Up
ESA_RS19800	50.24	138.89	2.77	P < 0.01	Up
ESA_RS19805	18.28	52.33	2.86	P < 0.01	Up
ESA_RS11615	23194.65	26474.44	1.14	P < 0.01	Up
ompX	3.08	3.63	1.18	P < 0.01	Up
ESA_RS16175	1.18	1.39	1.18	P < 0.01	Up
ESA_RS17575	12.88	14.19	1.10	P < 0.01	Up
ESA_RS18760	40.25	45.60	1.13	P < 0.01	Up
ESA_RS18775	27.72	35.70	1.29	P < 0.01	Up
fliR	69.80	100.78	1.44	P < 0.01	Up
ESA_RS05890	110.76	351.83	3.18	P < 0.01	Up
fliS	90.79	244.40	2.69	P < 0.01	Up
fliJ	39.00	21.21	0.54	P < 0.01	Down
ESA_RS05905	649.94	307.50	0.47	P < 0.01	Down