Table 10. GWAS results within and across environments for grain yield and related traits.
| Env | Traits | Marker | Allele identity | Allele | p-value | -log10(p) | Add | SnpR2 (%) | MAF |
|---|---|---|---|---|---|---|---|---|---|
| Sékou | 100SW | M1 | 100027985|F|0–60:A>G-60:A>G | G:G | 2.50E-04 | 3.60 | 0.18 | 24.45 | 0.08 |
| Sékou | DFF | M2 | 100075398|F|0–45:T>C-45:T>C | C:C | 1.49E-04 | 3.83 | 0.09 | 25.38 | 0.07 |
| Sékou | DTM | M3 | 100030821|F|0–34:A>C-34:A>C | C:C | 1.28E-04 | 3.89 | -0.02 | 23.57 | 0.22 |
| Sékou | GRY | M4 | 100032049|F|0–6:G>T-6:G>T | T:T | 8.53E-05 | 4.06 | -24.20 | 8.71 | 0.08 |
| Savè | 100SW | M5 | 100031485|F|0–27:G>A-27:G>A | A:A | 9.99E-05 | 4.00 | 0.07 | 11.46 | 0.15 |
| Savè | 100SW | M1 | 100027985|F|0–60:A>G-60:A>G | G:G | 1.33E-04 | 3.87 | 0.33 | 25.55 | 0.08 |
| Savè | DFF | M6 | 100048752|F|0–13:G>A-13:G>A | A:A | 7.49E-07 | 6.13 | -0.07 | 10.97 | 0.23 |
| Savè | DTM | M7 | 100070037|F|0–60:G>A-60:G>A | A:A | 2.27E-04 | 3.64 | -0.02 | 24.60 | 0.24 |
| Savè | NPP | M7 | 100070037|F|0–60:G>A-60:G>A | A:A | 4.89E-06 | 5.31 | -0.27 | 80.05 | 0.24 |
| Savè | NSP | M7 | 100070037|F|0–60:G>A-60:G>A | A:A | 3.67E-04 | 3.44 | -0.25 | 4.23 | 0.24 |
| Overall | 100SW | M1 | 100027985|F|0–60:A>G-60:A>G | G:G | 3.28E-04 | 3.48 | 4.60 | 24.23 | 0.08 |
| Overall | 100SW | M5 | 100031485|F|0–27:G>A-27:G>A | A:A | 7.80E-05 | 4.11 | -0.13 | 95.80 | 0.15 |
| Overall | DFF | M8 | 100030725|F|0–48:G>T-48:G>T | T:T | 6.48E-07 | 6.19 | -1.11 | 10.81 | 0.08 |
| Overall | DFF | M9 | 100031216|F|0–19:C>T-19:C>T | T:T | 2.66E-04 | 3.58 | 2.69 | 24.36 | 0.06 |
| Overall | DFF | M10 | 100031465|F|0–16:G>T-16:G>T | T:T | 2.12E-04 | 3.67 | -1.83 | 24.53 | 0.15 |
| Overall | DFF | M6 | 100048752|F|0–13:G>A-13:G>A | A:A | 1.99E-04 | 3.70 | -3.92 | 24.58 | 0.23 |
| Overall | DFF | M2 | 100075398|F|0–45:T>C-45:T>C | C:C | 1.28E-07 | 6.89 | 12.64 | 10.59 | 0.07 |
| Overall | DTM | M8 | 100030725|F|0–48:G>T-48:G>T | T:T | 2.14E-04 | 3.67 | 1.16 | 26.26 | 0.08 |
| Overall | DTM | M2 | 100075398|F|0–45:T>C-45:T>C | C:C | 4.70E-05 | 4.33 | 13.71 | 61.41 | 0.07 |
| Overall | GRY | M4 | 100032049|F|0–6:G>T-6:G>T | T:T | 6.53E-05 | 4.19 | -56.59 | 3.71 | 0.08 |
| Overall | NPP | M7 | 100070037|F|0–60:G>A-60:G>A | A:A | 3.81E-04 | 3.42 | -31.27 | 4.12 | 0.24 |
| Overall | NSP | M4 | 100032049|F|0–6:G>T-6:G>T | T:T | 5.17E-05 | 4.29 | -49.20 | 3.89 | 0.08 |
Env = environment, Add = additive effect, MAF = minor allele frequency, SnpR2 = proportion of phenotypic variation explained by marker