Table 4. Reference information for the genetic variants assessed.
| Variant | Reference accession | Coordinates of genetic locus in reference entry | Position of mutation in reference locus |
|---|---|---|---|
| RplD G70D | NC_011035.1 | 2033052–2033672 | amino acid 70 |
| 23S rRNA C2611T | NC_011035.1 | 1263408–1266305 | nucleotide 2603 |
| penA XXXIV | NZ_LT906440.1 | 1588456–1590201 | N/A (assessed presence/absence of this allele) |
| 16S rRNA C1209A | NC_011035.1 | 1266903–1268450 | nucleotide 1192 |
| N. meningitidis-like porA | NC_011035.1 | 735796–737125 | N/A (assessed nucleotide similarity across the full locus with a threshold of ≤ 90%)* |
| cppB deletion | LT592149.1 | 2912–3553 | N/A (assessed presence/absence of full locus) |
| DR-9A G168A | NC_011035.1 | 530088–530277 | nucleotide 168 |
*Isolates with a porA pseudogene with ≤90% similarity to the NC_011035.1 porA pseudogene were called positive for N. meningitidis-like porA. Note that all such isolates were confirmed to have a porA pseudogene that was ≥92% similar to the N. meningitidis porA (GenBank Accession: GQ173789.1), while all other isolates had ≤89% similarity to the N. meningitidis porA.