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. 2020 Feb 20;34:101460. doi: 10.1016/j.redox.2020.101460

Table 10.

A novel research publication type with big-omics experimental database mining analyses leads to original new findings and generate anew hypotheses. A few aspects of comparisons were made within this study using big-omics experimental database mining approaches, the traditional literature reviews and the meta-analysis.

category Big-omics Database mining Traditional literature review meta analysis
Analysis of experimental Data (NIH-Geo-DataSets with microarray experimental data, etc.) yes no yes
Original new Findings yes no no
Association research (gene co-expression patterns at the same pathology or stimuli) yes no yes
Causative research (upstream regulator gene deficient microarrays, …) yes no no
Panoramic view at multiple mechanisms and pathways yes yes yes
Improvement of our understanding yes yes yes
Searchable Database requirements and tools yes no yes
New publication types after –omics and high throughput experimental data generation yes no yes
Different focuses from original papers yes no no
Use of Ingenuity Pathway Analysis (IPA) to analyze experimental data yes no no
Bioinformatic prediction no no no
Future experimental verification yes yes yes
Summary of previous reports no yes yes
Example PMID: 22438968 [our datamining paper focusing on IL-35 (highly cited by 173 papers) ] PMID: 24060958 [a Nature Review paper of management of hypertriglyceridaemia] PMID: 23083786 [a meta-analysis paper focusing on Effects of fibrates in kidney disease]
experimental papers verifying the findings originated from example paper PMIDs: 26085094; 29371247 N/A PMID: 25419705
Use of multiple NIH databases including PubMed database (https://www.ncbi.nlm.nih.gov/books/NBK143764/) yes yes no no