. 2020 Jul 1;13(10):1544–1550. doi: 10.1016/j.jiph.2020.06.030

Table 2.

Non-synonymous genomic variations observed in study isolates as compared to global sequences excluding the lineage-specific genomic variations.

STRAIN	S	ORF (n)	M	N
MH013216	P97 L, T424I, C1313S	S733R/E736 K, F1609 L, P1883S, L3785 F, M4574I, V5557A, V51I^δ	–	W293C, A300V**
MH454272	W553R, R700 L, S950T	T649I, P777S, A1045 V, V1202I, E1835A, M2119I, P2742S, G3117E/V3120D	–	V178A, A300V**
		F5011I, R5027S/D5028Y/R5029 K, G5061R, V5551A***, V6030 F, E102C, H243Cδ, H73Nδ
MH306207	–	C167 G, A1045 V, E1835A, M2119I, G3117E, L3785F	–	S11 F, L283 F, A300V**
		A5362 L, V5551A***
MH371127	–	V117D, G981S, P1099R, V1375I, A1462 T, P1971S, D2204A	–	V178A, A300V**
		V5551A***, E102C
MH359139	W553R, R700L	T649I, P777S, A1045 V, V1202I, E1835A, M2119I, P2742S	–	V178A, A300V**
		V5551A***, T5560S, V6030 F, E102C, H73Nδ
MH432120	–	T636I, G981S, P1099R, V1375I, A1462 T, P1971S, F3098 L/T3101N	T127I	G28 V, V178A, D242E, V263A, A300V**
		F5072 L, V5551A***, I5559 M/T5560 F/G5561W/L5562 V/Y5563 V, I6668 M, V6431F
		G85D/P86 F/T87N*, E102C
MN120513	V26 L, S191 P, S459T	G981S, P1099R, K1255R, V1375I, A1462 T, H1714Y, P1971S, N4385 K, I4611 V, V5551A**, A5764S, M6272I, L6373R, L6958 P, V62F, G85D/P86F*, A218S ^δ		P7L, V178A, G198S, A300V**
MN120514	V26 L, T424I, Q1009L	T586S, G981S, P1099R, V1375I, E1428 G, A1462 T, A1301 V, H1714Y, P1971S, S2111R, N4385 K, K5019 N, V6030 F, L6412 F, V62F, P86L, I147L ^δ, A218S ^δ		V178A, G198S, R292 P, A300V**, S391I,

*Variations found in ORF3; ^¶ Variations found in ORF4a; δ Variations found in ORF4b; ** Variations specifically found UNIQUE to study isolates; ***Variation found in all isolates EXCEPT MH013216 (recombinant strain) and MN105241.