Table 2.
Quality of assemblies of synthetic datasets.
| Assembler | NGA50 (kbp) | Largest alignment | Contigs | Genome % | Misassemblies | Mismatches/100 kbp | Indels /100 kbp | Genome bins | rRNAs | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extensive | Local | 16S | 23S | ||||||||
| ArcticSynth | |||||||||||
| MetaHipMer | 52 | 1,085,233 | 9060 | 93.8 | 45 | 15 | 26 | 1.5 | 15 | 13 | 11 |
| MEGAHIT | 65 | 1,085,427 | 7432 | 95.1 | 110 | 78 | 134 | 1.9 | 16 | 14 | 7 |
| MetaSPAdes | 17 | 1,290,245 | 17,701 | 91.2 | 53 | 50 | 291 | 1.9 | 8 | 7 | 3 |
| MBARC-26 | |||||||||||
| MetaHipMer | 152 | 2,055,376 | 4239 | 92.3 | 80 | 30 | 3 | 0.4 | 19 | 15 | 11 |
| MEGAHIT | 121 | 1,636,294 | 5371 | 93.1 | 69 | 34 | 8 | 0.7 | 19 | 16 | 12 |
| MetaSPAdes | 193 | 2,055,367 | 4987 | 92.1 | 76 | 58 | 69 | 3.3 | 4 | 6 | 4 |