Table 4.
Quality of Marine mixed assemblies for various depths.
| Assembler | NGA50 (kbp) | Largest alignment | Contigs | Genome % | Misassemblies | Mismatches /100 kbp | Indels/100 kbp | Genome bins | rRNAs | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extensive | Local | 16S | 23S | ||||||||
| 5x | |||||||||||
| MetaHipMer | 0.18 | 28,718 | 196,390 | 88.2 | 3 | 95 | 72 | 2.4 | 7 | 12 | 6 |
| MEGAHIT | 0.24 | 34,471 | 197,872 | 90.5 | 68 | 27 | 71 | 2.5 | 9 | 15 | 8 |
| MetaSPAdes | 0.36 | 28,334 | 158,348 | 95.6 | 23 | 24 | 96 | 4.2 | 12 | 1 | 6 |
| 20x | |||||||||||
| MetaHipMer | 251 | 1,238,326 | 179,308 | 99.6 | 4 | 10 | 16 | 0.2 | 11 | 20 | 14 |
| MEGAHIT | 239 | 1,382,528 | 184,773 | 99.7 | 3 | 15 | 24 | 1.3 | 13 | 15 | 9 |
| MetaSPAdes | 249 | 1,382,094 | 147,628 | 99.5 | 0 | 20 | 12 | 0.7 | 14 | 1 | 7 |
| 50x | |||||||||||
| MetaHipMer | 328 | 1,410,119 | 181,509 | 99.6 | 6 | 7 | 15 | 1.3 | 12 | 21 | 12 |
| MEGAHIT | 239 | 1,410,120 | 184,646 | 99.7 | 6 | 16 | 24 | 1.2 | 12 | 17 | 9 |
| MetaSPAdes | 246 | 1,382,118 | 147,619 | 99.8 | 0 | 24 | 16 | 1.2 | 12 | 1 | 6 |