TABLE 1.
CHR | SNP id | MAF | P-value from linear regression | P-value from permutation | P-value from comparison between the two values |
6 | rs9348440T | 0.478 | 1.63 × 10–7 | 1.33 × 10–7 | 1 |
6 | rs6456368C | 0.480 | 1.54 × 10–7 | 1.00 × 10–7 | 0.640 |
6 | rs10946398C | 0.479 | 8.35 × 10–8 | 6.67 × 10–8 | 1 |
6 | rs7754840C | 0.479 | 4.93 × 10–8 | 3.33 × 10–8 | 1 |
6 | rs9460546G | 0.481 | 5.45 × 10–8 | 3.33 × 10–8 | 1 |
16 | rs7197218G | 0.014 | 4.81 × 10–8 | 7.33 × 10–7 | <2.2 × 10–16 |
Here, we provide information for SNP features such as chromosome, SNP id, and minor allele frequency (MAF) and the p-values from both tests. In the last column of the table, we also include the results of an exact binomial test for permutation results based on the null hypothesis that the p-value of the permutation test is the same as the results from the parametric approach.