Table 2. Parameterization Used for Calculation of the Inhibitor Constant Affinity.
enzyme | Zn(II) | Zn(II)-binding residues | inhibitor | |
---|---|---|---|---|
model A | amber99sb-ildn | amber99sb-ildn | amber99sb-ildn | GAFF2/AM1-BCC |
model B | amber99sb-ildn | OUR | OUR | GAFF2/AM1-BCC |
model C | amber99sb-ildn | OUR | OUR | GAFF2/OUR |