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. 2020 Jul 3;28(3):475–485.e5. doi: 10.1016/j.chom.2020.06.021
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-human IgG peroxidase Sigma-Aldrich Cat# A6029-1ML; RRID: AB_258272
CR3022 ter Meulen et al., 2006; Yuan et al., 2020 N/A
Goat anti-human IgG - H&L (HRP) Abcam Cat# ab6858-1MG; RRID: AB_955433
Phage display antibody set Miersch et al., Bioraxiv https://doi.org/10.1101/2020.06.05.137349 N/A
VIR antibody set Pinto et al., 2020 S309 PDB: 6WS6

Bacterial and Virus Strains

2019 n-CoV/USA_WA1/2020 CDC (gift from Natalie Thornburg) N/A
Vaccinia virus vTF7-3 Fuerst et al., 1986 N/A
VSV-eGFP Chandran et al., 2005 N/A

Biological Samples

Patient serum set This study N/A

Chemicals, Peptides, and Recombinant Proteins

Blasticidin S HCl GIBCO/Thermo Fisher Cat# A1113903
Cytosine arabinoside Sigma-Aldrich Cat# C1768
Formaldehyde Solution Millipore Sigma Cat# FX0410-5
HEPES, free acid Millipore Sigma Cat #5310-OP
Hoechst 33342 Invitrogen/Thermo Fisher Cat# H3570
Human ACE2-Fc This study GenBank: BAB40370.1 & AAC82527.1
L-[35S]-cysteine Perkin Elmer Cat# NEG022T
L-[35S]-methionine Perkin Elmer Cat# NEG009T
Lipofectamine 2000 Transfection Reagent Invitrogen/Thermo Fisher Cat# 11668019
Mouse ACE2-Fc This study NCBI Reference Sequence: NP_001123985.1
Phosphotungstic acid hydrate Sigma-Aldrich Cat# 79690-25G
Pierce ECL Western Blotting Substrate Thermo Scientific/Thermo Fisher Cat# 32106
Protein A Agarose Resin GoldBio Cat# P-400-100
TRIzol Reagent Invitrogen/Thermo Fisher Cat# 15596018
TrueBlue peroxidase substrate KPL/SeraCare Cat# 5510-0050

Critical Commercial Assays

Anti-SARS-CoV-2 ELISA (IgG) serology test Euroimmun US, Inc., 1 Bloomfield Ave, Mountain Lakes, NJ 07046 N/A

Deposited Data

Nucleotide sequence of VSV-eGFP-SARS-CoV-2-SΔ21 This study BioProject: PRJNA635934; SRA: SRR11878607

Experimental Models: Cell Lines

A549 Gift from Jan Carette N/A
BHK-21 ATCC Cat# CCL-10
BSRT7/5 Buchholz et al., 1999 N/A
Caco-2 ATCC Cat# HTB-37
Caco-2 BBe1 ATCC Cat# CRL-2102
Calu-3 Gift from Stanley Perlman N/A
Expi293F Thermo Fisher Cat# A14527
ExpiCHO GIBCO/Thermo Fisher Cat# A29127
HEK293 ATCC Cat# CRL-1573
HEK293T ATCC Cat# CRL-3216
H1Hela Gift from Jan Carette N/A
HepG2 ATCC Cat# HB-8065
HT-29 ATCC Cat# HTB-38
Huh7.5.1 Gift from Harry Greenberg
MA104 Gift from Harry Greenberg N/A
Vero CCL81 ATCC Cat# CCL-81
Vero E6 ATCC Cat# CRL-1586
Vero E6-TMPRSS2 This paper N/A
Vero-furin Mukherjee et al., 2016 N/A

Experimental Models: Organisms/Strains

N/A N/A N/A

Oligonucleotides

TruSeq RNA Single Indexes Set A Illumina Cat# 20020492
TruSeq RNA Single Indexes Set B Illumina Cat# 20020493

Recombinant DNA

pCAGGS-VSV-G Stanifer et al., 2011 N/A
pFM1.2-hACE2-Fc This paper GenBank: AB046569.1
pFM1.2-mACE2-Fc This paper NCBI Reference Sequence: NM_001130513.1
pGEM3-VSV L Whelan et al., 1995 N/A
pGEM3-VSV G Stanifer et al., 2011 N/A
pGEM3-VSV N Whelan et al., 1995 N/A
pGEM3-VSV P Whelan et al., 1995 N/A
pLX304-TMPRSS2 Zang et al., 2020 N/A
psPAX2 Gift from Didier Trono (unpublished data) Addgene Cat# 12260
pVSV-eGFP Chandran et al., 2005 N/A
pVSV-eGFP-SARS-CoV-2-SAA This study Spike mutated from MN908947.3
pVSV-eGFP-SARS-CoV-2-S MERS SAA cytoplasmic tail switch This paper Spike mutated from a codon-optimized version of AHI48572.1
pVSV-eGFP-SARS-CoV-2-S VSV G #1 cytoplasmic tail switch This paper VSV Indiana G (strain Orsay)
pVSV-eGFP-SARS-CoV-2-S VSV G #2 cytoplasmic tail switch This paper VSV Indiana G (strain Orsay)
pVSV-eGFP-SARS-CoV-2-S VSV G Ecto/TM/tail switch This paper VSV Indiana G (strain Orsay)
pVSV-eGFP-SARS-CoV-2-S VSV G TM/tail switch This paper VSV Indiana G (strain Orsay)

Software and Algorithms

BBMap 38.79 Bushnell et al., 2017 https://jgi.doe.gov/data-and-tools/bbtools/
Fastp 0.20.0 Chen et al., 2018 https://github.com/OpenGene/fastp
Image Analyses: GE InCell Analyzer 1000 Workstation GE Life Sciences (now Cytiva) N/A
NUCmer 3.1 Delcher et al., 2002 http://mummer.sourceforge.net/
SAMtools 1.9 Li et al., 2009 http://www.htslib.org/
SPAdes 3.13.0 Bankevich et al., 2012 http://cab.spbu.ru/software/spades/
Statistics: Prism 8.0 GraphPad N/A

Other

TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Human/Mouse/Rat Illumina Cat #20020596