Antibodies |
|
Anti-human IgG peroxidase |
Sigma-Aldrich |
Cat# A6029-1ML; RRID: AB_258272
|
CR3022 |
ter Meulen et al., 2006; Yuan et al., 2020
|
N/A |
Goat anti-human IgG - H&L (HRP) |
Abcam |
Cat# ab6858-1MG; RRID: AB_955433
|
Phage display antibody set |
Miersch et al., Bioraxiv https://doi.org/10.1101/2020.06.05.137349
|
N/A |
VIR antibody set |
Pinto et al., 2020 |
S309 PDB: 6WS6
|
|
Bacterial and Virus Strains |
|
2019 n-CoV/USA_WA1/2020 |
CDC (gift from Natalie Thornburg) |
N/A |
Vaccinia virus vTF7-3 |
Fuerst et al., 1986 |
N/A |
VSV-eGFP |
Chandran et al., 2005 |
N/A |
|
Biological Samples |
|
Patient serum set |
This study |
N/A |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Blasticidin S HCl |
GIBCO/Thermo Fisher |
Cat# A1113903 |
Cytosine arabinoside |
Sigma-Aldrich |
Cat# C1768 |
Formaldehyde Solution |
Millipore Sigma |
Cat# FX0410-5 |
HEPES, free acid |
Millipore Sigma |
Cat #5310-OP |
Hoechst 33342 |
Invitrogen/Thermo Fisher |
Cat# H3570 |
Human ACE2-Fc |
This study |
GenBank: BAB40370.1 & AAC82527.1
|
L-[35S]-cysteine |
Perkin Elmer |
Cat# NEG022T |
L-[35S]-methionine |
Perkin Elmer |
Cat# NEG009T |
Lipofectamine 2000 Transfection Reagent |
Invitrogen/Thermo Fisher |
Cat# 11668019 |
Mouse ACE2-Fc |
This study |
NCBI Reference Sequence: NP_001123985.1
|
Phosphotungstic acid hydrate |
Sigma-Aldrich |
Cat# 79690-25G |
Pierce ECL Western Blotting Substrate |
Thermo Scientific/Thermo Fisher |
Cat# 32106 |
Protein A Agarose Resin |
GoldBio |
Cat# P-400-100 |
TRIzol Reagent |
Invitrogen/Thermo Fisher |
Cat# 15596018 |
TrueBlue peroxidase substrate |
KPL/SeraCare |
Cat# 5510-0050 |
|
Critical Commercial Assays |
|
Anti-SARS-CoV-2 ELISA (IgG) serology test |
Euroimmun US, Inc., 1 Bloomfield Ave, Mountain Lakes, NJ 07046 |
N/A |
|
Deposited Data |
|
Nucleotide sequence of VSV-eGFP-SARS-CoV-2-SΔ21
|
This study |
BioProject: PRJNA635934; SRA: SRR11878607 |
|
Experimental Models: Cell Lines |
|
A549 |
Gift from Jan Carette |
N/A |
BHK-21 |
ATCC |
Cat# CCL-10 |
BSRT7/5 |
Buchholz et al., 1999 |
N/A |
Caco-2 |
ATCC |
Cat# HTB-37 |
Caco-2 BBe1 |
ATCC |
Cat# CRL-2102 |
Calu-3 |
Gift from Stanley Perlman |
N/A |
Expi293F |
Thermo Fisher |
Cat# A14527 |
ExpiCHO |
GIBCO/Thermo Fisher |
Cat# A29127 |
HEK293 |
ATCC |
Cat# CRL-1573 |
HEK293T |
ATCC |
Cat# CRL-3216 |
H1Hela |
Gift from Jan Carette |
N/A |
HepG2 |
ATCC |
Cat# HB-8065 |
HT-29 |
ATCC |
Cat# HTB-38 |
Huh7.5.1 |
Gift from Harry Greenberg |
|
MA104 |
Gift from Harry Greenberg |
N/A |
Vero CCL81 |
ATCC |
Cat# CCL-81 |
Vero E6 |
ATCC |
Cat# CRL-1586 |
Vero E6-TMPRSS2 |
This paper |
N/A |
Vero-furin |
Mukherjee et al., 2016 |
N/A |
|
Experimental Models: Organisms/Strains |
|
N/A |
N/A |
N/A |
|
Oligonucleotides |
|
TruSeq RNA Single Indexes Set A |
Illumina |
Cat# 20020492 |
TruSeq RNA Single Indexes Set B |
Illumina |
Cat# 20020493 |
|
Recombinant DNA |
|
pCAGGS-VSV-G |
Stanifer et al., 2011 |
N/A |
pFM1.2-hACE2-Fc |
This paper |
GenBank: AB046569.1
|
pFM1.2-mACE2-Fc |
This paper |
NCBI Reference Sequence: NM_001130513.1
|
pGEM3-VSV L |
Whelan et al., 1995 |
N/A |
pGEM3-VSV G |
Stanifer et al., 2011 |
N/A |
pGEM3-VSV N |
Whelan et al., 1995 |
N/A |
pGEM3-VSV P |
Whelan et al., 1995 |
N/A |
pLX304-TMPRSS2 |
Zang et al., 2020 |
N/A |
psPAX2 |
Gift from Didier Trono (unpublished data) |
Addgene Cat# 12260 |
pVSV-eGFP |
Chandran et al., 2005 |
N/A |
pVSV-eGFP-SARS-CoV-2-SAA
|
This study |
Spike mutated from MN908947.3
|
pVSV-eGFP-SARS-CoV-2-S MERS SAA cytoplasmic tail switch |
This paper |
Spike mutated from a codon-optimized version of AHI48572.1
|
pVSV-eGFP-SARS-CoV-2-S VSV G #1 cytoplasmic tail switch |
This paper |
VSV Indiana G (strain Orsay) |
pVSV-eGFP-SARS-CoV-2-S VSV G #2 cytoplasmic tail switch |
This paper |
VSV Indiana G (strain Orsay) |
pVSV-eGFP-SARS-CoV-2-S VSV G Ecto/TM/tail switch |
This paper |
VSV Indiana G (strain Orsay) |
pVSV-eGFP-SARS-CoV-2-S VSV G TM/tail switch |
This paper |
VSV Indiana G (strain Orsay) |
|
Software and Algorithms |
|
BBMap 38.79 |
Bushnell et al., 2017 |
https://jgi.doe.gov/data-and-tools/bbtools/ |
Fastp 0.20.0 |
Chen et al., 2018 |
https://github.com/OpenGene/fastp |
Image Analyses: GE InCell Analyzer 1000 Workstation |
GE Life Sciences (now Cytiva) |
N/A |
NUCmer 3.1 |
Delcher et al., 2002 |
http://mummer.sourceforge.net/ |
SAMtools 1.9 |
Li et al., 2009 |
http://www.htslib.org/ |
SPAdes 3.13.0 |
Bankevich et al., 2012 |
http://cab.spbu.ru/software/spades/ |
Statistics: Prism 8.0 |
GraphPad |
N/A |
|
Other |
|
TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Human/Mouse/Rat |
Illumina |
Cat #20020596 |