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. 2020 Jun 26;11:942. doi: 10.3389/fpls.2020.00942

Figure 3.

Figure 3

Plastid genome variation in the putranjivoid clade. Whole-plastome alignments divide the plastid genome of our study taxa into 13 Locally Collinear Blocks (LCB), which are shown as color-coded representations of syntenic regions. The IRB was removed from plastid genomes with two copies of the large inverted repeats to allow for an optimal homology assessment. Blocks below the horizontal central line represent inversions relative to the references, shown as the upper two taxa. The height of the colored region within a block reflects the average sequence identity relative to the reference. Species names are color-coded to indicate their family: Balanopaceae (black), Lophopyxidaceae (blue), and Putranjivaceae (purple). The pink blocks in both Balanops species indicate the IR regions. Red blocks represent rrn5, rrn4.5, rrn23, and rrn16 genes, green blocks represent trnA-UGC and trnI-GAU genes.