Table 3.
Genes in Locally Collinear Blocks (LCB) identified using ProgressiveMauve alignment for plastomes of the putranjivoid clade.
| LCB | Genes |
|---|---|
| 1 | trnH-GUG, psbA, trnK-UUU, matK |
| 2 | psbI, psbK, trnQ-UUG |
| 3 | trnS-GCU, trnG-UCC, trnR-UCU, atpA, atpF, atpH, atpI, rps2, rpoC2, rpoC1, rpoB, trnC-GCA, petN, psbM, trnD-GUC, trnY-GUA, trnE-UUC, trnT-GGU, psbD, psbC, trnS-UGA, psbZ, trnG-UCC, trnM-CAU, rps14, psaB, psaA, ycf3, trnS-GGA |
| 4 | trnT-UGU, rps4 |
| 5 | ndhC, ndhK, ndhJ, trnF-GAA, trnL-UAA |
| 6 | trnV-UAC, trnM-CAU, atpE, atpB |
| 7 | Intergenic region |
| 8 | petL, psbE, psbF, psbL, psbJ, petA, cemA, ycf4, psaI, accD, rbcL |
| 9 | petG, trnW-CCA, trnP-UGG, psaJ, rpl33, rps18, rpl20, rps12_5’exon, clpP |
| 10 | rps19_fragment, rpl22, rps3, rpl16, rpl14, rps8, rpl36, rps11, rpoA, petD, petB, psbH, psbN, psbT, psbB |
| 11 | ndhF, rpl32, trnL-UAG, ccsA, ndhD, psaC, ndhE, ndhG, ndhI, ndhA, ndhH, rps15, trnN-GUU, trnR-ACG, rrn5, rrn4.5, rrn23, trnA-UGC, trnI-GAU, rrn16, trnV-GAC, rps12_3’exon, ndhB, trnL-CAA, ycf2 |
| 12 | trnI-CAU |
| 13 | rpl23, rpl2, rps19_fragment |
infA, rps7, rps16and ycf1were not included in the LCBs as they were not present in all of the plastomes of the putranjivoid clade.