Table 1.
Pearson Correlation Coefficients between Estimated Recombination Rates for Five African American Recombination Maps at Different Scales
| JHS | AA | AfAdm | ASW_LDhat | ASW_pyrho | |
|---|---|---|---|---|---|
| Scale: 1 kb | |||||
| JHS | 1.00 | 0.61 | 0.23 | 0.63 | 0.69 |
| AA | 0.61 | 1.00 | 0.26 | 0.65 | 0.60 |
| AfAdm | 0.23 | 0.26 | 1.00 | 0.30 | 0.23 |
| ASW_LDhat | 0.63 | 0.65 | 0.30 | 1.00 | 0.74 |
| ASW_pyrho | 0.69 | 0.60 | 0.23 | 0.74 | 1.00 |
| Scale: 100 kb | |||||
| JHS | 1.00 | 0.90 | 0.79 | 0.86 | 0.86 |
| AA | 0.90 | 1.00 | 0.81 | 0.91 | 0.89 |
| AfAdm | 0.79 | 0.81 | 1.00 | 0.81 | 0.80 |
| ASW_LDhat | 0.86 | 0.91 | 0.81 | 1.00 | 0.94 |
| ASW_pyrho | 0.86 | 0.89 | 0.80 | 0.94 | 1.00 |
The JHS map is our IBD-based map, the AA and AfAdm maps are admixture-based maps, and the ASW_LDhat and ASW_pyrho maps are LD-based maps. Results at other scales from 1 kb to 500 kb can be found in Table S1.