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. 2020 Jun 23:1–16. doi: 10.1080/07391102.2020.1778537

Table 2.

The top ten scoring bioactive ligands with binding energy (BE), dock score (DS), van der Waals (VDW) and H-bond (HB) energy.

Compounds 5R82 (SARS-Cov-2 Main protease)
Compounds 6VYB (SARS-Cov-2 spike Protein)
Compounds 1R42 (Human ACE2 receptor)
BE DS VDW HB BE DS VDW HB BE DS VDW HB
Cucurbitacin E −91.00 −113.40 −71.54 −19.48 Orientin −72.30 −110.05 −59.02 −13.24 2-monolinolenin −78.30 −116.12 −56.82 −21.48
Orientin −90.20 −134.14 −63.66 −26.58 Berberine −69.70 −82.48 −64.85 −4.90 Berberine −71.50 −95.33 −58.76 −12.73
Bis-andrographolide −90.00 −100.30 −88.61 −1.39 Vitexin −67.70 −98.34 −57.79 −9.93 Orientin −70.60 −101.17 −58.84 −11.76
Cucurbitacin B −88.80 −110.75 −73.57 −15.28 Magnoflorine −65.50 −90.88 −57.45 −8.02 Vitexin −68.10 −85.24 −57.61 −10.50
Isocucurbitacin B −87.10 −108.56 −72.49 −14.56 Palmatine −65.20 −83.71 −61.76 −3.48 Andrographolide −68.00 −93.29 −52.22 −15.77
Vitexin −85.70 −98.03 −72.98 −12.72 Bryonolic acid −63.90 −80.57 −60.38 −3.50 Isocucurbitacin B −67.40 −95.87 −41.24 −26.19
Berberine −83.20 −103.89 −74.85 −8.35 Piperine −63.50 −89.19 −55.10 −8.42 Cucurbitacin E −66.00 −99.46 −43.40 −22.63
Bryonolic acid −81.00 −91.63 −74.26 −6.71 Stigmasterol −63.30 −74.57 −63.32 0.00 Bryonolic acid −65.60 −80.99 −54.03 −11.60
Piperine −78.10 −90.95 −73.98 −4.16 Andrographolide −61.30 −75.71 −57.77 −3.50 Magnoflorine −64.40 −95.46 −48.91 −15.52
Magnoflorine −77.00 −92.41 −64.03 −12.98 β-sitosterol −58.20 −69.35 −58.25 0.00 Cucurbitacin B −64.20 −85.81 −49.02 −15.23