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. 2020 Jul 3;3:340. doi: 10.1038/s42003-020-1059-1

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 6 — a–c Boxplots showing expression level of genes harboring methylated and non-methylated TEs within body and flanking regions in CG (a), CHG (b), and CHH (c) contexts at different stages of seed development. d–f Frequency of TEs within gene body and flanking regions of protein-coding genes that are DMR-associated [DMR(+)] and not associated with DMRs [DMR(−)] in CG (d), CHG (e), and CHH (f) contexts is shown in bar graphs. g–i Frequency of TEs within gene body and flanking regions of differentially expressed genes that are DMR-associated [DMR(+)/DEG(+)] and not associated with DMRs [DMR(−)/DEG(+)] in CG (g), CHG (h), and CHH (i) contexts is shown in bar graphs. Significance of difference (p-value) was determined by Wilcoxon signed rank test and is indicated above the horizontal bars. Asterisks denote p-value < 2.2e−16. U upstream, GB gene body, D downstream.