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. Author manuscript; available in PMC: 2021 Jun 8.
Published in final edited form as: Dev Cell. 2020 May 21;53(5):545–560.e7. doi: 10.1016/j.devcel.2020.04.018

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Alexa Fluor 647 mouse anti-γH2AX (pS139) BD Biosciences 560447; RRID:AB_1645414
Rabbit monoclonal anti-AXIN2 Abcam ab109307; RRID:AB_10862550
Rabbit polyclonal anti-AXIN1 Thermo Fisher 34–5900; RRID:AB_2533178
Rabbit monoclonal anti-c-MYC [Y69] Abcam ab32072; RRID:AB_731658
Rabbit anti-TNKS1 465 antiserum (Smith et al., 1998) N/A
Rabbit polyclonal anti-histone H3K27Ac Active Motif 39133; RRID:AB_2561016
Rabbit polyclonal anti-acetyl-histone H3 Millipore 06–599; RRID:AB_2115283
Rabbit Anti-acetyl-histone H4 serum Millipore 06–866; RRID:AB_310270
Mouse monoclonal anti-active-β-catenin, clone 8E7 Millipore 05–665; RRID:AB_309887
Mouse anti-β-catenin, IgG1 BD Biosciences 610153; RRID:AB_397554
eIF2α-S1(phospho S51) Abcam ab32157; RRID:AB_732117
Mouse monoclonal anti-YAP1 Santa Cruz Biotechnology Inc sc-101199; RRID: AB_1131430
Rabbit monoclonal anti-eIF2α Cell Signaling 5324; RRID:AB_10692650
Rabbit polyclonal anti-SIRT1 Cell Signaling 2028; RRID:AB_1196631
PTEN (D4.3) XP Rabbit mAb antibody Cell Signaling Technology 9188; RRID:AB_2253290
Mouse anti-beta-actin monoclonal antibody, unconjugated, clone AC-15 Sigma A1978; RRID:AB_476692
Alexa 488 goat anti-rabbit IgG Thermo-Fisher A-11034; RRID:AB_2576217
Alexa 488 donkey anti-mouse IgG Thermo-Fisher A-21202; RRID:AB_141607
Peroxidase-conjugated donkey anti-rabbit IgG Jackson ImmunoResearch 711-035-152; RRID:AB_10015282
Peroxidase-conjugated goat anti-mouse IgG Jackson ImmunoResearch 115-035-174; RRID:AB_2338512
Chemicals, Peptides, and Recombinant Proteins
IWR1-endo (IWR1) Sigma 10161
IWR1-exo Cayman Chemical 13598
XAV939 Sigma X3004
iCRT3 Sigma SML0211
iCRT14 Tocris 4299
DMSO Thermo-Fisher D12345
Lambda Protein Phosphatase NEB P0753S
Cytochalasin D Sigma C8273
α-amanitin Sigma A2263
RNase A Thermo-Fisher EN0531
Hyaluronidase Sigma-Aldrich H3884
Calf serum Atlanta Biologicals S11495
Minimal essential medium α (MEMα) Thermo-Fisher 3251
MEM, Hepes (MEM) Thermo-Fisher 12360038
EmbryoMax® KSOM Medium (KSOM) MilliporeSigma MR-106-D
EmbryoMax® Human Tubal Fluid (HTF) MilliporeSigma MR-070-D
AlbuMAX™ I Lipid-Rich BSA Thermo-Fisher 11020021
Poly (vinyl alcohol), average MW 30-70,000 (PVA) Sigma-Aldrich P8136
Equine chorionic gonadotropin (eCG) Lee Biosolutions 493-10
Human chorionic gonadotropin (hCG) Sigma-Aldrich C1063
IGEPAL® CA-630 Sigma-Aldrich I8896
Dimethylformamide Sigma-Aldrich PHR1553
Paraformaldehyde Electron Microscopy Sciences 15710
Milrinone Sigma M4659
Critical Commercial Assays
Click-iT™ Plus OPP Alexa Fluor™ 488 Protein Synthesis Assay Kit Thermo-Fisher C10456
Click-iT™ EdU Alexa Fluor™ 488 Imaging Kit Thermo-Fisher C10337
Click-iT™ RNA Alexa Fluor™ 488 Imaging Kit Thermo-Fisher C10329
SuperSignal™ West Femto Maximum Sensitivity Substrate Thermo-Fisher 34095
PicoPure™ RNA Isolation Kit Applied Biosystems™ KIT0204
SYBR™ Green PCR Master Mix Applied Biosystems™ 4309155
SMART-Seq® v4 Ultra® Low Input RNA Kit for Sequencing Takara Bio USA, Inc. 634888
QuikChange II XL Site-Directed Mutagenesis Kit Agilent 200521
Nextera DNA Library Preparation Kit Illumina FC-121-1030
Nextera Index Kit (24 indexes, 96 samples) Illumina FC-121-1011
MinElute PCR Purification Kit Qiagen 28004
QIAprep Spin Miniprep Kit Qiagen 27104
AmpliCap-MaxTM T 7 High Yield Message Maker Kit CELLSCRIPT ™ C-ACM04037
Phusion High-Fidelity PCR Master Mix NEB M0531S
MEGAscript™ T7 Transcription Kit Thermo-Fisher AM1334
MEGAclear™ Transcription Clean-Up Kit Thermo-Fisher AM1908
Deposited Data
Raw and processed ATAC-seq and RNA-seq data This paper GEO: GSE123815
Experimental Models: Organisms/Strains
Mice: Hsd:NSA(CF-1) females Envigo 033
Mice: B6SJLF1/J males Jackson Laboratory 100012
Mice: B6(Cg)- Ctnnb1<tm1Knw>/J Jackson Laboratory 022775
Mice: C57BL/6-Tg(Zp3-cre)93Knw/J Jackson Laboratory 003651
Oligonucleotides
TNKS-siRNA Thermo-Fisher Silencer Select siRNAs 4390771 Assay ID: s75316
β-catenin siRNA Thermo-Fisher Silencer Select siRNAs 4390771 Assay ID: s63418
Silencer Select Negative Control No. 1 Thermo-Fisher Silencer Select siRNAs 4390843
TNKS morpholino (TNKS-MO): 5′-GGTCTGCTTTGCAGTGAATATCCAT-3′ Gene Tools N/A
β-catenin morpholino: CTTGAGTAGCCATTGTCCACGCAGC Gene Tools N/A
Standard Control morpholino (Ctr-MO): 5′-CCTCTTACCTCAGTTACAATTTATA-3′ Gene Tools N/A
Primers: see Supplementary Table S8
Recombinant DNA
pIVT2-Axin2 This paper N/A
pIVT2-Axin2-V26D This paper N/A
pcDNA3-S33Y Beta-catenin Addgene (Kolligs et al., 1999) Cat#19286
pGEMHE-mCherry-mTrim21 Addgene (Clift et al., 2017) Cat#105522
pFLAG-TNKS-2 Addgene (Sbodio et al., 2002) Cat#34691
pGEMHE-TNKS-2 This paper N/A
pGEMHE-NLS-Beta-catenin-S33Y This paper N/A
Software and Algorithms
Prism 7 GraphPad Software RRID:SCR_002798 URL: https://www.graphpad.com/
ImageJ (Schneider et al., 2012) RRID:SCR_003070 URL: https://imagej.net/
Trim Galore! Babraham Bioinformatics RRID:SCR_011847 URL: http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
Bowtie 2 (v2.2.6) (Langmead and Salzberg, 2012) RRID:SCR_016368 URL: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
Cutadapt (v1.11) (Martin, 2011) RRID:SCR_011841 URL: http://code.google.com/p/cutadapt/
STAR Aligner (v2.5.1b) (Dobin et al., 2013) https://intranet.birmingham.ac.uk/it/teams/infrastructure/research/bear/bluebear/applications/star-aligner-v2-5.1b.aspx
featureCounts (v1.5.0-p1) (Liao et al., 2014) RRID:SCR_012919 URL: http://bioinf.wehi.edu.au/featureCounts/
DESeq2 (Love et al., 2014) RRID:SCR_015687 URL: https://bioconductor.org/packages/release/bioc/html/DESeq2.html
MACS2 (Feng et al., 2012) http://liulab.dfci.harvard.edu/MACS/
Gene Set Enrichment Analysis (GSEA) (Subramanian et al., 2005) RRID:SCR_003199 URL: http://www.broadinstitute.org/gsea/
Ingenuity® Pathway Analysis version 01-07 Qiagen Inc. N/A
Other