Table 2.
Summary and content analysis of different types of transposable elements in the Hibiscus cannabinus genome
| Items | Number | Length (Mb) | Per cent of assembled genome (%) |
|---|---|---|---|
| Total repeat fraction | 1 422 622 | 732 | 67.83 |
| Class I: Retroelement | 757 069 | 630 | 58.41 |
| LTR Retrotransposon | 398 688 | 472 | 43.72 |
| Ty1/Copia [RLC] | 131 768 | 202 | 18.69 |
| Ty3/Gypsy [RLG] | 159 226 | 203 | 18.86 |
| Other | 107 694 | 66.6 | 6.17 |
| Non‐LTR Retrotransposon | 261 227 | 135 | 12.52 |
| LINE [Rlx] | 217 603 | 129 | 12 |
| SINE [RSx] | 43 624 | 5.6 | 0.52 |
| Unclassified retroelement | 97 154 | 23.5 | 2.18 |
| Class II: DNA transposon | 321 833 | 93.8 | 8.7 |
| TIR | |||
| CMC [DTC] | 10 179 | 3.6 | 0.34 |
| hAT [DTA] | 45 670 | 11.3 | 1.05 |
| Mutator [DTM] | 20 520 | 8.3 | 0.77 |
| Tcl/Mariner [DTT] | 4570 | 1.5 | 0.14 |
| PIF/Harbinger [DTH] | 2341 | 0.5 | 0.05 |
| Other | 233 983 | 67 | 0.01 |
| Helitron | 727 | 0.1 | 0.01 |
| Tandem repeats | 335 985 | 34.8 | 3.23 |
| Unknown | 41 075 | 11.1 | 1.03 |