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. 2020 Jul 6;13:94. doi: 10.1186/s12920-020-00746-5

Table 4.

Screening space for the threshold optimization for each variant caller

Strelka2 Shimmer
Somatic EVS from 5 to 20 (steps of 0.25) Q-value from 0.0005 to 0.05 (steps of 0.0005)
Mutect2 VarScan2
TLOD from 0 to 200 (steps of 1) Somatic p-value from 0.00005 to 0.01 (steps of 0.00005)