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. Author manuscript; available in PMC: 2020 Jul 6.
Published in final edited form as: ACS Chem Neurosci. 2019 Nov 11;10(11):4643–4658. doi: 10.1021/acschemneuro.9b00473

Table 1:

List the parameters for five MD system groups. The rmin and rcen are respectively the minimum and center of mass distances between two monomers (Fig. 1). Other parameters including number of water molecule (waters), volume (V), peptide concentration (C). Each system group has nine MD systems and a 500-ns MD simulation was performed for each MD system.

System Group rcen (Å) rmin (Å) water molecules (#) Box size (nm) V (nm3) C (mM)
1 35 ≥ 6 9998 7.8 330 20.13
2 40 ≥ 11 15385 8.8 495 13.42
3 45 ≥ 16 22219 9.9 705 9.44
4 50 ≥ 21 30794 11.0 969 6.85
5 60 ≥ 31 53794 13.1 1701 3.91