Table 1.
No. | variation | Freq.in patients | Freq. in controls | Ref. | gnomAD | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Allele Freq. (Total) | East Asia | African | South Asian | Other | Ashkenazi Jewish | Latino | European (non‐Finnish) | European (Finnish) | |||||||||||||
Hemi. d | Freq. e | Hemi. d | Freq. e | Hemi. d | Freq. e | Hemi. d | Freq. e | Hemi. d | Freq. e | Hemi. d | Freq. e | Hemi. d | Freq. e | Hemi. d | Freq. e | ||||||
1 a | F42S | 1/776 | 0/709 | Ma et al. (2016) | 0.00002446 | 2 | 0.0003369 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
2 a | E105K | 1/776 | 0/709 | Ma et al. (2016) | 0.00002942 | 1 | 0.0003366 | 0 | 0.00005249 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
3 b | Thr 123 ins | 16/200 | 0/200 | Lee et al. (2008) | 0.02615 | 464 | 0.09628 | 462 | 0.09197 | 696 | 0.06680 | 29 | 0.01772 | 48 | 0.01627 | 49 | 0.006974 | 184 | 0.005174 | 5 | 0.001679 |
19/221 | 7/101 | Shi et al. (2011) | |||||||||||||||||||
0/78 | 2/72 | Luddi et al. (2016) | |||||||||||||||||||
4 | S131S | 1/200 | 0/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
5 | V154I | ‐ | ‐ | Zhang et al. (2007) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
6 | Q156H | 1/200 | 0/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
7 b | L165S | 54/200 | 36/200 | Lee et al. (2008) | 0.02663 | 491 | 0.09787 | 484 | 0.09293 | 751 | 0.06798 | 29 | 0.01761 | 54 | 0.01676 | 52 | 0.007075 | 201 | 0.005345 | 7 | 0.001778 |
0/78 | 2/72 | Luddi et al. (2016) | |||||||||||||||||||
19/221 | 7/101 | Shi et al. (2011) | |||||||||||||||||||
8c | G170R | 2/221 | 0/101 | Shi et al. (2011) | 0.0002600 | 0 | 0 | 1 | 0.0002097 | 26 | 0.001881 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 0.0001521 | 0 | 0 |
9c | E174ter | 1/200 | 0/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
10c | E189ter | 1/200 | 0/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
11c | E192E | 120/200 | 172/200 | Lee et al. (2008) | |||||||||||||||||
108/221 | 79/101 | Shi et al. (2011) | |||||||||||||||||||
47/78 | 17/72 | Luddi et al. (2016) | |||||||||||||||||||
47/96 | 53/96 | Christensen et al. (2008) | |||||||||||||||||||
12 | R344W | 2/776 | 0/709 | Ma et al. (2016) | 0.00006628 | 2 | 0.0005059 | 0 | 0 | 0 | 0 | 1 | 0.0004516 | 0 | 0 | 0 | 0 | 0 | 0.00003707 | 0 | 0 |
13 c | L346H | 1/188 | 0/17 | Paduch et al. (2005) | 0.00001973 | 3 | 0.0002703 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
14 c | F348L | 1/44 | 0/56 | Zhang et al. (2007) | 0.0006696 | 49 | 0.007454 | 0 | 0.0001656 | 13 | 0.0007561 | 1 | 0.0001923 | 0 | 0 | 0 | 0.00007218 | 2 | 0.00005478 | 0 | 0 |
3/221 | 2/101 | Shi et al. (2011) | |||||||||||||||||||
15 a | M359I | 1/776 | 0/709 | Ma et al. (2016) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
16 b | L364F | 7/188 | 0/17 | Paduch et al. (2005) | 0.03788 | 0 | 0 | 36 | 0.007211 | 61 | 0.005298 | 59 | 0.04045 | 81 | 0.03241 | 150 | 0.02303 | 1987 | 0.05790 | 366 | 0.05737 |
7/96 | 7/96 | Christensen et al. (2008) | |||||||||||||||||||
14/300 | 10/287 | Ribarski et al. (2009) | |||||||||||||||||||
2/166 | 0/60 | Asadpor et al. (2013) | |||||||||||||||||||
7/78 | 10/72 | Luddi et al. (2016) | |||||||||||||||||||
17 c | P425L | ‐ | ‐ | Paduch et al. (2005) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
18 | P469S | Our mutation | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ||
19 b | H475Y | 1/188 | 0/17 | Paduch et al. (2005) | 0.02666 | 491 | 0.09795 | 481 | 0.09293 | 787 | 0.06823 | 28 | 0.01730 | 52 | 0.01648 | 54 | 0.007072 | 201 | 0.005337 | 6 | 0.001724 |
14/200 | 8/200 | Lee et al. (2008) | |||||||||||||||||||
24/221 | 5/101 | Shi et al. (2011) | |||||||||||||||||||
20 c | E500K | 1/188 | 0/17 | Paduch et al. (2005) | 0.0009104 | 0 | 0.00006749 | 0 | 0 | 115 | 0.009440 | 2 | 0.0005655 | 0 | 0 | 0 | 0 | 1 | 0.00002171 | 0 | 0 |
21 c | Q537E | 1/96 | 0/96 | Christensen et al. (2008) | 0.00008916 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.0001911 | 0 | 0 | 0 | 0 | 5 | 0.0001856 | 0 | 0 |
22 b | M579I | 2/188 | 0/17 | Paduch et al. (2005) | 0.004432 | 2 | 0.0001354 | 4 | 0.0005362 | 127 | 0.01043 | 10 | 0.003797 | 4 | 0.001709 | 9 | 0.001292 | 181 | 0.005224 | 61 | 0.007826 |
80/200 | 28/200 | Lee et al. (2008) | |||||||||||||||||||
3/300 | 2/287 | Ribarski et al. (2009) | |||||||||||||||||||
3/166 | 0/60 | Asadpor et al. (2013) | |||||||||||||||||||
7/78 | 2/72 | Luddi et al. (2016) | |||||||||||||||||||
23 | ss6202791C>T(S600F) | 56/200 | 38/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
24 a | N636S | 1/776 | 0/709 | Ma et al. (2016) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
25 a | R646Q | 1/776 | 0/709 | Ma et al. (2016) | 0.00001968 | 0 | 0 | 0 | 0.00005405 | 0 | 0 | 0 | 0.0001887 | 0 | 0 | 0 | 0 | 0 | 0.00001087 | 0 | 0.00005543 |
26 c | T659M | 1/188 | 0/17 | Paduch et al. (2005) | 0.001253 | 1 | 0.00006755 | 0 | 0.0001599 | 9 | 0.0008911 | 0 | 0.0005658 | 30 | 0.01188 | 1 | 0.0002858 | 47 | 0.001430 | 0 | 0.00005442 |
1/200 | 0/200 | Lee et al. (2008) | |||||||||||||||||||
27 c | N715I | 1/200 | 0/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
28 c | I728F | 1/200 | 0/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
29 c | F732S | 1/200 | 0/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
30 c | K734N | ‐ | ‐ | Paduch et al. (2005) | 0.0003037 | 0 | 0 | 0 | 0 | 1 | 0.0002098 | 1 | 0.0001893 | 0 | 0 | 7 | 0.001001 | 12 | 0.0003142 | 0 | 0 |
6/200 | 4/200 | Lee et al. (2008) | |||||||||||||||||||
31 c | V735G | 1/200 | 0/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
32 c | I747F | 1/200 | 0/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
33 c | E749D | 1/200 | 0/200 | Lee et al. (2008) | 0.000005474 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.00001227 | 0 | 0 |
34 | Q750Q | 1/200 | 0/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
35 | P757P | 1/200 | 0/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
36 b | Thr 123 ins+ L165S+ H475Y | 8/143 | 0/142 | Stouffs et al. (2005) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
4/188 | 0/17 | Paduch et al. (2005) | |||||||||||||||||||
6/200 | 0/200 | Lee et al. (2008) | |||||||||||||||||||
9/300 | 6/287 | Ribarski et al. 2009 | |||||||||||||||||||
19/221 | 5/101 | Shi et al. (2011) | |||||||||||||||||||
4/166 | 1/60 | Asadpor et al. (2013) | |||||||||||||||||||
37 | M579I+ K734N | 1/188 | 0/17 | Paduch et al. (2005) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
38 | Thr 123 ins+ L165S | 1/188 | 0/17 | Paduch et al. (2005) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | |
8/200 | 0/200 | Lee et al. (2008) | |||||||||||||||||||
0/221 | 2/101 | Shi et al. (2011) | |||||||||||||||||||
39 | L364F+ P425L | 1/188 | 0/17 | Paduch et al. (2005) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
40 | Thr 123 ins+ V154I | 8/44 | 0/56 | Zhang et al. (2007) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
41 | Thr 123` ins+ H475Y | 4/166 | 0/60 | Asadpor et al. (2013) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
42 | E192E+ H475Y | 3/221 | 0/101 | Shi et al. (2011) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
43 | E192E+G170R | 2/221 | 0/101 | Shi et al. (2011) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
44 | L165S+ E192E | 2/200 | 14/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
45 | M579I+ S600F+ E192E | 10/200 | 2/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
46 | M579I+ S600F+ E192E+ L165S | 10/200 | 2/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
47 | K734N + S600F+ E192E+ L165S | 8/200 | 0/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
48 | M579I+ E192E | 16/200 | 8/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |
49 | S600F+E192E+ L165S | 8/200 | 12/200 | Lee et al. (2008) | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ | ‐ |