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. 2020 Apr 28;215(3):747–766. doi: 10.1534/genetics.119.302985

Table 1. Effects of strongest GMR-hFUSR521C and GMR-hTDP-43M337V suppressors on GMR-c9orf72(G4C2)30-related photoreceptor neurodegeneration.

Column A Column B Column C Column D Column E Column F Column G
Exelixis insert Fus modification TDP-43 Modification C9orf72 Modification % c9orf72 Degeneration % c9orf72 Degeneration % c9orf72 Degeneration
Week 1 Week 3 Week 6
c00800 S2 S3 S3 0 0 1.7
c01016 S2 S2 S3 2.6 12.2 58.5
c01295 S1 S1 S3 6.8 17.6 53.4
c01399 S2 S2 S1 14.2 18.4 50.5
c02909 S1 S2 S3 4.2 10.4 42.4
c03244 S2 S1 S3 8.1 12.9 34.9
c04205 S2 S1 S3 9 14.5 31.8
c04522 S1 S1 S3 0 8.9 46.5
c04582 S2 S2 S2 3.1 26.1 Not done
c05668 S2 S2 S3 1.5 3.1 18.2
c06325 S2 S1 S1 9.4 25.3 64.8
c07023 S2 S3 S3 4.8 9.8 46.1
d00123 S2 S2 S3 0 4.8 0
d00147 S2 S1 S1 4.4 26.1 Not done
d01275 S3 S3 S3 0.7 0.8 0.8
d01345 S2 S2 S3 1.9 9.6 36
d02380 S2 S1 S3 0 3.8 39.6
d02712 S1 S2 S2 7.4 8 70
d02769 S2 S2 S3 0 0 8.3
d02833 S1 S2 S2 0 7.1 Not done
d02874 S1 S1 S1 5.7 45.7 67.6
d03208 S2 S2 S3 0 8.7 6.1
d03562 S3 S3 S3 0.7 7 25.6
d04116 S1 S1 S3 10.8 24 46.2
d04883 S2 S2 S3 5.8 29.8 61.4
d05297 S2 S1 S1 6.6 26.9 Not done
d05884 S2 S1 S2 2.4 28.6 70.3
d06126 S3 S3 S2 8.9 53.4 Not done
d07098 S1 S1 S2 0 16.4 23.4
d08551 S2 S2 S3 0 0 0
d09937 S2 S2 S2 34.5 36.9 62.5
d10223 S2 S3 S2 0 18.4 60
d10376 S3 S2 S3 0 1.2 18.5
d10800 S2 S2 S3 0 0 0
d11666 S2 S2 S3 5.6 9.4 26.5
e00530 S2 S2 S3 0.7 3.3 16.5
e00651 S2 S1 S3 7.3 11.9 44.2
e00985 S2 S2 S3 11.1 20.6 51.6
e01238 S2 S2 S3 1.1 7.1 4
e01976 S2 S2 S3 0 5.9 12.5
e02098 S2 S2 S3 3.4 15.2 43.8
e02166 S2 S2 S1 6.9 37.9 55.2
e02234 S1 S2 S1 15.2 27.7 54.3
e02236 S2 S1 S1 8.2 34.2 59.6
e02284 S3 S3 S3 7 19.1 43.9
e02535 S2 S2 S3 13.5 19.4 67.6
e02684 S2 S1 S2 13.5 30.8 53.9
e02699 S3 S1 S3 7.1 10 29.2
e03409 S2 S2 S1 16.9 20.4 Not done
e04015 S2 S2 S2 0 11.9 27.7
e04545 S2 S2 S3 6.1 13.2 40.2
f01587 S1 S1 S2 10.1 16.5 12.8
f03242 S3 S2 S3 0 0 16.2
f03756 S2 S2 S3 1.3 13 11.1
f05408 S2 S3 S3 0 0 0
f06593 S3 S3 S3 0 0 0
c03600 S2 S2 NE 12.3 26.9 60.9
c04473 S2 S2 NE 18 26.5 65.9
c04797 S2 S2 NE 24.4 39.3 72.9
c05977 S2 S1 NE 9.2 29.4 Not done
c06293 S2 S2 NE 18.2 34.5 68.5
c06703 S1 S2 NE 32.3 61.1 82.4
c06744 S2 S2 NE 20.1 34.8 63.7
c07042 S1 S1 NE 18.9 40.9 73.3
c07155 S2 S2 NE 22.8 49.4 67.7
d04075 S2 S3 NE 12.4 26.7 Not done
d07488 S2 S2 NE 35.7 30.8 76.9
d08578 S2 S2 NE 26.5 51.5 77.4
d09179 S2 S1 NE Not done 56.1 72.2
e00355 S2 S2 NE 22.5 31.7 60.3
e00777 S2 S2 NE 15.5 24.9 41.7
e00785 S2 S2 NE 24 32.9 75.6
e02741 S2 S2 NE 27.1 47.5 79
f02738 S1 S1 NE 18.3 22.4 76.8
c03467 S2 S2 E2 41.5 52.5 Not done
c03635 S2 S2 E3 23.6 73.1 95.7
c05849 S2 S1 E1 26.7 57.5 Not done
d02986 S2 S2 E3 13.3 60.2 82.3
d06616 S2 S2 E3 60 80 87.5
e02580 S2 S3 E3 28.4 59 91.5
e04200 S2 S2 E2 66.9 85 Not done
f01201 S2 S2 E3 58.3 78.3 98.2
f03408 S1 S1 E1 20.4 50 77.8
f05963 S1 S2 E3 12.5 68.3 80.8

Effects of 84 overlapping suppressors of GMR-hFUSR521C and GMR-hTDP-43M337V degenerative eye phenotypes in a GMR-c9orf72(G4C2)30 model of progressive neurodegeneration. Insert number is listed in Column A, followed by the observed modification in the GMR-hFUSR521C (Column B) and GMR-hTDP-43M337V (Column C) screening strains. In Columns B and C, S1, S2, and S3 refer to the qualitative strength of suppression, where S1 is weak, S2 is moderate, and S3 is strong suppression. Column D depicts modification effect of the insertion on the GMR-c9orf72(G4C2)30 model, where S is suppression, E is enhancement, and NE is no effect. Columns E, F, and G provide the penetrance of the neurodegenerative phenotype at weeks 1, 3, and 6. S1/E1 is suppression/enhancement at one time point, S2/E2 is suppression/enhancement at two time points, and S3/E3 is suppression/enhancement at all three time points. Crosses were performed in batches and each insert was compared to control crosses (GMR-c9orf72(G4C2)30 crossed to isoA) for that particular batch (data not shown).