Table 1. Brief summary of RNA editing and modification factors in C. elegans.
C. elegans | Human Ortholog | Domains | Description |
---|---|---|---|
Adenosine to inosine RNA editing | |||
adr-1 | ADAD1 | dsRBD, adenosine deaminase | ADR-1 physically interacts with ADR-2 and promotes editing of certain transcripts, ADR-1 can also inhibit editing by an unknown mechanism |
adr-2 | ADAR2 | dsRBD, adenosine deaminase | ADR-2 is the sole adenosine deaminase acting on mRNA in C. elegans |
adbp-1 | None identified | ADBP-1 is important for nuclear localization of ADR-2 and RNA editing | |
Possible mRNA editing and mRNA modification enzymes in C. elegans | |||
cdd-1 | CDA | Cytidine deaminase | Loss of cdd-1 affects uridine metabolism, may also be involved in C-U editing of mRNA |
cdd-2 | CDA | Cytidine deaminase | Loss of cdd-2 affects uridine metabolism, may also be involved in C-U editing of mRNA |
nsun-2 | NSUN2 | RNA C5-methyltransferase, SAM- dependent methyltransferase | Based on homology, NSUN-2 is predicted to have cytosine methyltransferase activity on tRNA and mRNA |
B0024.11 | PUS7 | Pseudouridine synthase | Based on homology, B0024.11 is predicted to have pseudouridylation activity on RNA |
— | METTL3 | Adenine-N6-methyltransferase | No known homolog |
— | METTL14 | Adenine-N6-methyltransferase | No known homolog |
mett-10 | METTL16 | Adenine-N6-methyltransferase | Based on homology, METT-10 is predicted to have N6-methyltransferase activity on rRNA |
This table describes factors that are currently known to act in adenosine-to-inosine RNA editing in C. elegans. In addition, this table includes factors that are predicted to function in different types of RNA modification of mRNA.