Table 1.
A summary of the numbers and percentages of Mu and P elements insertions in or near genes. For random insertions, enrichment fold is defined as 1; values above 1 mean an enrichment of TE insertions, values below 1 mean a depletion of TE insertions
| Total (100%) | Genic | 500 bp upstream of TSS | 200 bp upstream of TSS | 5′ UTR | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Count | Count | % of total | Enrichment fold | P-value (χ² test) | Count | % of total | Enrichment fold | P-value (χ² test) | Count | % of total | Enrichment fold | P-value (χ² test) | Count | % of total | enrichment fold | P-value (χ² test) | |
| Random_Zm | 421280 | 32246 | 7.65% | 1 | NA | 3985 | 0.95% | 1 | NA | 1544 | 0.37% | 1 | NA | 1268 | 0.30% | 1 | NA |
| UniformMu_Zm | 92702 | 54040 | 58.29% | 7.62 | <1E−5 | 15976 | 17.23% | 18.22 | <1E−5 | 12103 | 13.06% | 35.62 | <1E−5 | 25142 | 27.12% | 90.11 | <1E−5 |
| SomaticMu_Zm | 320044 | 181776 | 56.80% | 7.42 | <1E−5 | 45582 | 14.24% | 15.06 | <1E−5 | 32739 | 10.23% | 27.91 | <1E−5 | 62028 | 19.38% | 64.39 | <1E−5 |
| Pack_MULE_Zm | 1369 | 183 | 13.37% | 1.75 | <1E−5 | 167 | 12.20% | 12.9 | <1E−5 | 94 | 6.87% | 18.73 | <1E−5 | 20 | 1.46% | 4.85 | <1E−5 |
| Random_Dm | 349280 | 222916 | 63.82% | 1 | NA | 13746 | 3.94% | 1 | NA | 6511 | 1.86% | 1 | NA | 11315 | 3.24% | 1 | NA |
| P_Dm | 18213 | 12586 | 69.10% | 1.08 | <1E−5 | 5485 | 30.12% | 7.65 | <1E−5 | 4409 | 24.21% | 12.99 | <1E−5 | 4578 | 25.14% | 7.76 | <1E−5 |
| Total (100%) | CDS | 3'UTR | 200 bp downstream of TTS | 500 bp downstream of TTS | |||||||||||||
| Count | Count | % of total | Enrichment fold | P-value (χ² test) | Count | % of total | Enrichment fold | P-value (χ² test) | Count | % of total | Enrichment fold | P-value (χ² test) | Count | % of total | Enrichment fold | P-value (χ² test) | |
| Random_Zm | 421280 | 9188 | 2.18% | 1 | NA | 1889 | 0.45% | 1 | NA | 1508 | 0.36% | 1 | NA | 3781 | 0.90% | 1 | NA |
| UniformMu_Zm | 92702 | 14220 | 15.34% | 7.03 | < 1E-5 | 1471 | 1.59% | 3.54 | < 1E-5 | 1220 | 1.32% | 3.68 | <1E−5 | 2703 | 2.92% | 3.25 | <1E−5 |
| SomaticMu_Zm | 320044 | 61393 | 19.18% | 8.8 | < 1E-5 | 7046 | 2.20% | 4.91 | < 1E-5 | 5760 | 1.80% | 5.03 | <1E−5 | 12279 | 3.84% | 4.27 | <1E−5 |
| Pack_MULE_Zm | 1369 | 17 | 1.24% | 0.57 | 0.01947 | 25 | 1.83% | 4.07 | < 1E-5 | 16 | 1.17% | 3.27 | <1E−5 | 52 | 3.80% | 4.23 | <1E−5 |
| Random_Dm | 349280 | 56979 | 16.31% | 1 | NA | 18468 | 5.29% | 1 | NA | 5498 | 1.57% | 1 | NA | 10968 | 3.14% | 1 | NA |
| P_Dm | 18213 | 729 | 4.00% | 0.25 | < 1E-5 | 264 | 1.45% | 0.27 | < 1E-5 | 333 | 1.83% | 1.16 | 0.00849 | 967 | 5.31% | 1.69 | <1E−5 |