Table 2. CHD4 mutations in cancer and Sifrim-Hitz-Weiss syndrome.
| Mutated Residue |
Location | Predicted effect based on structure | Biochemical observations | |
|---|---|---|---|---|
| Cancer | ||||
| Cys464Tyr | PHD finger 2 | Disruption of Zn2+ binding in PHD finger 2 | Reduction in ATPase activity (Kovač et al., 2018) | |
| Val558Phe | Double chromodomain | Reduced ATPase activity (Kovač et al., 2018) | ||
| Arg572Gln | Double chromodomain | Disruption of contact with tracking strand | Reduced DNA binding affinity, Loss of full remodeling activity and ATPase activity (Kovač et al., 2018) | |
| Leu912Val | ATPase lobe 2 | No prediction made | Reduction of ATPase activity (Kovač et al., 2018) | |
| His1151Arg | ATPase lobe 2 | In close proximity to motif Va, might disrupt contact of Trp1148 | Reduction of ATPase activity, abolishment of remodeling activity (Kovač et al., 2018) | |
| Arg1162Gln | ATPase lobe 2, motif VI | Located in ATPase motif VI (arginine finger), Disruption of interaction with ATP | Reduction of ATPase activity (Kovač et al., 2018) | |
| His1196Tyr | ATPase lobe 2 | Located in the C-terminal bridge region, Removes negative regulation | Speed of chromatin remodeling is increased and better nucleosome centering capability (Kovač et al., 2018) | |
| Leu1215 | ATPase lobe 2/C-terminal bridge | Not located in modeled region | ||
| Sifrim-Hitz-Weiss syndrome (Sifrim et al., 2016; Weiss et al., 2016) | ||||
| Cys467Tyr | PHD finger 2 | Disruption of Zn2+ binding in PHD finger 2 | ||
| Ser851Tyr | ATPase lobe 1 | |||
| Gly1003Asp | ATPase lobe 2 | Disruption of contact with H3 | ||
| Arg1068His | ATPase lobe 2 | Disruption of structural integrity of RecA fold | ||
| Arg1127Gln | ATPase lobe 2 | Disruption of contact with DNA minor groove, equivalent arginine residue in SMARCA4 is implicated in ‘Coffin Siris syndrome’ | ||
| Trp1148Leu | ATPase lobe 2, motif Va | Disruption of contact with guide strand | Uncoupling of ATPase activity and chromatin remodeling (Liu et al., 2017) | |
| Arg1173Leu | Destabilization | |||
| Val1608Ile | Not located in modeled region |