Table 3:

The objects contained in the runinfo file.

Variable	Description
N	The number of subjects
X	The design matrix
varNamesX	The names of the columns of the design matrix
varInModel	Whether a variable is included in the model
interactions	The interactions in the model in terms of the design matrix
interactionsBase	The interactions in the model in terms of the original covariates
YtildeStar	The Nq × V matrix of preprocessed data
beta0Star	The initial guess for the beta maps
covariates	The covariate names
covfile	The filepath to the covariate file
isCat	A p × 1 vector indexing categorical covariates
maskfl	The path to the mask file
niifiles	A cell array of paths to the subject level fMRI data
numPCA	The number of principal components for preprocessing
outfolder	Path to the output directory
prefix	Prefix for the files in the analysis
q	The number of independent components
thetaStar	Structure containing initial guess values
time_num	The number of time points for each subject
voxSize	The dimension of the mask

Table 3 displays the variables contained in the runinfo file for a HINT analysis.