TABLE 2.
Representative list of patients with actionable variants.
Patient | Associated conditions with gene | Gene (ClinVar) | Nucleotide | Protein | rsID | Clinvar signature (interpretation) |
2 | Congenital long QT syndrome | KCNJ2 | c.566G > T | p.Arg189Ile | rs199473381 | Likely pathogenic(1) |
12 | Long QT syndrome | KCNQ1 | c.914G > C | p.Trp305Ser | rs120074186 | Pathogenic(2);Likely pathogenic(1) |
29 | Hereditary pancreatitis | SPINK1 | c.101A > G | p.Asn34Ser | rs17107315 | Risk factor(2);Pathogenic(4);Uncertain significance(3) |
Cystic fibrosis; Hereditary pancreatitis | CFTR | c.3154T > G | p.Phe1052Val | rs150212784 | Likely pathogenic(3);Pathogenic(2);Uncertain significance(4);Drug-response(1) | |
30 | Cardiac arrhythmia; Long QT syndrome | ANK2 | c.11716C > T | p.Arg3906Trp | rs121912706 | Likely benign(4);Pathogenic(2);Uncertain significance(2) |
32 | Malignant tumor of prostate; Hereditary cancer-predisposing syndrome | MSR1 | c.877C > T | p.Arg293* | rs41341748 | Pathogenic(1);Uncertain significance(3);Benign(1) |
Hereditary prostate cancer | RNASEL | c.793G > T | p.Glu265* | rs74315364 | Pathogenic(1);Likely benign(1);Uncertain significance(1) | |
Long QT syndrome | KCNE1 | c.253G > A | p.Asp85Asn | rs1805128 | Benign(5);Likely benign(5);risk factor(3);Pathogenic(1);Likely pathogenic(1);Uncertain significance(2) | |
43 | Thrombophilia, Thyroid cancer | HABP2 | c.1601G > A | p.Gly534Glu | rs7080536 | Risk factor(2);Likely benign(1);Benign(1) |
Thrombophilia | F5 | c.A1601G | p.Q534R | rs6025 | Pathogenic(4);Risk factor(4);Benign(1) | |
52 | Hereditary cancer risk | CHEK2 | c.470T > C | p.Ile157Thr | rs17879961 | Likely pathogenic(8);Pathogenic(9);Risk factor(3);Uncertain significance(2) |
MYH-associated polyposis; Hereditary cancer-predisposing syndrome | MUTYH | c.1437_1439delGGA | p.Glu480del | rs587778541 | Pathogenic(14) | |
56 | Prothrombin deficiency, congenital; Thrombophilia | F2 | c.*97G > A | rs1799963 | Pathogenic(4);Risk factor(4) | |
Thrombophilia | F5 | c.A1601G | p.Q534R | rs6025 | Pathogenic(4);Risk factor(4);Benign(1) | |
81 | Hereditary cancer-predisposing syndrome | RAD50 | c.2801del | p.Asn934fs | rs748536322 | Pathogenic(1) |
84 | Hereditary cancer-predisposing syndrome | NBN | c.511A > G | p.Ile171Val | rs61754966 | Benign(3);Likely benign(1);Uncertain significance(11);Pathogenic(1);Risk factor(1) |
91 | Familial adenomatous polyposis | APC | c.3920T > A | p.Ile1307Lys | rs1801155 | Likely benign(1);Likely pathogenic(3);Pathogenic(1);Uncertain significance(10);Risk factor(9) |
92 | Hereditary cancer risk | CHEK2 | c.470T > C | p.Ile157Thr | rs17879961 | Likely pathogenic(8);Pathogenic(9);Risk factor(3);Uncertain significance(2) |
94 | Prothrombin deficiency, congenital; Thrombophilia | F2 | c.*97G > A | rs1799963 | Pathogenic(4);Risk factor(4) |
The full table is given in Supplementary File S2. The asterisk denotes the variant in Clinvar https://www.ncbi.nlm.nih.gov/clinvar/variation/13310/.