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. 2020 Jun 30;11:619. doi: 10.3389/fgene.2020.00619

TABLE 2.

Representative list of patients with actionable variants.

Patient Associated conditions with gene Gene (ClinVar) Nucleotide Protein rsID Clinvar signature (interpretation)
2 Congenital long QT syndrome KCNJ2 c.566G > T p.Arg189Ile rs199473381 Likely pathogenic(1)
12 Long QT syndrome KCNQ1 c.914G > C p.Trp305Ser rs120074186 Pathogenic(2);Likely pathogenic(1)
29 Hereditary pancreatitis SPINK1 c.101A > G p.Asn34Ser rs17107315 Risk factor(2);Pathogenic(4);Uncertain significance(3)
Cystic fibrosis; Hereditary pancreatitis CFTR c.3154T > G p.Phe1052Val rs150212784 Likely pathogenic(3);Pathogenic(2);Uncertain significance(4);Drug-response(1)
30 Cardiac arrhythmia; Long QT syndrome ANK2 c.11716C > T p.Arg3906Trp rs121912706 Likely benign(4);Pathogenic(2);Uncertain significance(2)
32 Malignant tumor of prostate; Hereditary cancer-predisposing syndrome MSR1 c.877C > T p.Arg293* rs41341748 Pathogenic(1);Uncertain significance(3);Benign(1)
Hereditary prostate cancer RNASEL c.793G > T p.Glu265* rs74315364 Pathogenic(1);Likely benign(1);Uncertain significance(1)
Long QT syndrome KCNE1 c.253G > A p.Asp85Asn rs1805128 Benign(5);Likely benign(5);risk factor(3);Pathogenic(1);Likely pathogenic(1);Uncertain significance(2)
43 Thrombophilia, Thyroid cancer HABP2 c.1601G > A p.Gly534Glu rs7080536 Risk factor(2);Likely benign(1);Benign(1)
Thrombophilia F5 c.A1601G p.Q534R rs6025 Pathogenic(4);Risk factor(4);Benign(1)
52 Hereditary cancer risk CHEK2 c.470T > C p.Ile157Thr rs17879961 Likely pathogenic(8);Pathogenic(9);Risk factor(3);Uncertain significance(2)
MYH-associated polyposis; Hereditary cancer-predisposing syndrome MUTYH c.1437_1439delGGA p.Glu480del rs587778541 Pathogenic(14)
56 Prothrombin deficiency, congenital; Thrombophilia F2 c.*97G > A rs1799963 Pathogenic(4);Risk factor(4)
Thrombophilia F5 c.A1601G p.Q534R rs6025 Pathogenic(4);Risk factor(4);Benign(1)
81 Hereditary cancer-predisposing syndrome RAD50 c.2801del p.Asn934fs rs748536322 Pathogenic(1)
84 Hereditary cancer-predisposing syndrome NBN c.511A > G p.Ile171Val rs61754966 Benign(3);Likely benign(1);Uncertain significance(11);Pathogenic(1);Risk factor(1)
91 Familial adenomatous polyposis APC c.3920T > A p.Ile1307Lys rs1801155 Likely benign(1);Likely pathogenic(3);Pathogenic(1);Uncertain significance(10);Risk factor(9)
92 Hereditary cancer risk CHEK2 c.470T > C p.Ile157Thr rs17879961 Likely pathogenic(8);Pathogenic(9);Risk factor(3);Uncertain significance(2)
94 Prothrombin deficiency, congenital; Thrombophilia F2 c.*97G > A rs1799963 Pathogenic(4);Risk factor(4)

The full table is given in Supplementary File S2. The asterisk denotes the variant in Clinvar https://www.ncbi.nlm.nih.gov/clinvar/variation/13310/.