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. 2020 Jun 30;11:629. doi: 10.3389/fgene.2020.00629

Table 5.

Top four significant windows for the slope term on NBA as regressed on average THI 86 to 93 days into pregnancy in the TML_LR population.

Location Var(%) N SNP Positional genes QTL traits
SSC12: 15,953,277–17,487,606 0.45 32 ENSSSCG00000017299 (MARCH10),
ENSSSCG00000017300 (MRC2),
ENSSSCG00000017301 (TLK2),
ENSSSCG00000033421,
ENSSSCG00000017304 (EFCAB3),
ENSSSCG00000051573,
ENSSSCG00000045518,
ENSSSCG00000047329,
ENSSSCG00000049121,
ENSSSCG00000017305,
ENSSSCG00000017306,
ENSSSCG00000017307 (MYL4),
ENSSSCG00000017308 (CDC27),
ENSSSCG00000017310 (KANSL1),
ENSSSCG00000017311 (MAPT),
ENSSSCG00000043989,
ENSSSCG00000017314 (SPPL2C),
ENSSSCG00000017313,
ENSSSCG00000031893,
ENSSSCG00000017316 (NSF),
ENSSSCG00000031561 		Red blood cell count, hematocrit, loin muscle area, loin pH 24 h post-mortem
SSC9: 28,988,041–29,535,913 0.39 10 ENSSSCG00000039906,
ENSSSCG00000020347,
ENSSSCG00000048478 		Litter weight, hind-leg conformation
SSC5: 5,425,963–5,866,100 0.34 21 ENSSSCG00000038685 (MPPED1),
ENSSSCG00000051106,
ENSSSCG00000000029 (SCUBE1),
ENSSSCG00000000034 (TTLL12),
ENSSSCG00000000033,
ENSSSCG00000000031 (MCAT),
ENSSSCG00000042788,
ENSSSCG00000046130,
ENSSSCG00000000035 (TTLL1),
ENSSSCG00000048701,
ENSSSCG00000000036 (PACSIN2)		 Hind-feet conformation, corpus luteum number
SSC6: 23,525,525–23,900,710 0.34 16 ENSSSCG00000047100,
ENSSSCG00000018823,
ENSSSCG00000048963,
ENSSSCG00000050597,
ENSSSCG00000047287 		Obesity index, gestation length, eicosadienoic acid content, 60-day body weight

Location, indicates the chromosome number (SSC1 to SSC18), followed by the starting and end position of the genomic window(s) in base pairs; Var(%), the percental variance explained by the most relevant 10-SNP window within the region of interest; N SNP, number of SNP marker included in the genomic region identified; Positional genes, Ensembl gene stable ID (with official gene symbol when known) mapped to the genomic regions identified; QTL traits, indicates which traits have known QTLs mapped within the genomic region of interest, based on QTLs reported in the Pig QTL database (https://www.animalgenome.org/cgi-bin/QTLdb/SS/index).