Table 2.

Sequencing data statistics

Sample	Raw reads	Raw bases	Clean reads	Clean bases	Error rate; (%)	Q20 (%)	Q30 (%)	GC content (%)
EgPSC_0d_1	60,847,206	9,187,928,106	60,032,580	8,950,587,025	0.0274	97.19	91.78	47.07
EgPSC_0d_2	65,486,882	9,888,519,182	64,718,518	9,648,903,196	0.0267	97.47	92.42	47.43
EgPSC_0d_3	44,838,914	6,725,837,100	44,709,544	6,679,256,433	0.0120	98.31	95.24	46.25
EgPSC_10d_1	50,879,460	7,682,798,460	49,912,092	7,433,785,290	0.0232	98.79	95.88	41.48
EgPSC_10d_2	45,451,476	6,863,172,876	44,642,728	6,648,774,193	0.0234	98.73	95.67	43.67
EgPSC_10d_3	51,627,418	7,795,740,118	50,541,444	7,440,873,654	0.0234	98.72	95.73	45.10
EgPSC_20d_1	62,302,076	9,407,613,476	46,103,180	6,618,060,319	0.0231	98.78	96.06	48.29
EgPSC_20d_2	56,237,888	8,491,921,088	45,097,156	6,377,338,828	0.0232	98.76	96.02	48.01
EgPSC_20d_3	54,920,334	8,292,970,434	52,009,700	7,464,895,752	0.0233	98.77	95.88	45.28
EgPSC_40d_1	59,219,662	8,942,168,962	58,640,210	8,770,998,130	0.0235	98.66	95.60	47.32
EgPSC_40d_2	52,049,106	7,859,415,006	51,576,654	7,738,872,659	0.0237	98.61	95.46	48.24
EgPSC_40d_3	54,113,540	8,171,144,540	53,665,904	8,042,017,580	0.0238	98.58	95.35	47.31
EgPSC_80d_1	49,360,298	7,453,404,998	48,784,352	7,308,163,088	0.0239	98.52	95.23	47.27
EgPSC_80d_2	49,876,008	7,531,277,208	49,296,316	7,387,535,278	0.0240	98.49	95.13	46.91
EgPSC_80d_3	50,275,646	7,591,622,546	49,770,288	7,457,638,729	0.0241	98.45	95.03	46.99
Average	53,832,394	8,125,702,273	51,300,044	7,597,846,677	0.0232	98.46	95.09	46.44