Table 4.
Suggestive genes for ratings of potato chip fattiness and liking identified by mvGWAS
| Trait | CHR | SNP (CHR:BP) | ALT | REF | MAF | P | Gene | HIT_TYPE | SNP_TYPE |
|---|---|---|---|---|---|---|---|---|---|
| Fattiness | 2 | 2:141755773 | A | T | 0.32 | 2.96E-06 | LRP1B | Within | Imputed |
| 10 | 10:116662107 | C | T | 0.05 | 8.97E-06 | RP11-106M7.4 | Nearest | Imputed | |
| Liking | 7 | 7:34676953 | T | A | 0.06 | 3.05E-07 | NPSR1-AS1 | Within | Imputed |
| 8 | 8:40998854 | A | T | 0.04 | 5.14E-07 | RNU6-356P | Nearest | Imputed | |
| 9 | 9:20636973 | T | C | 0.48 | 1.15E-06 | MLLT3 | Nearest | Genotyped | |
| 10 | 10:8085050 | G | A | 0.08 | 8.19E-07 | GATA3-AS1 | Nearest | Imputed | |
| 19 | 19:22476027 | A | G | 0.11 | 4.71E-06 | ZNF729 | Within | Imputed |
Two genes on chr 2 (LINC00486 and LRP1B) and two genes on chr 10 (FAM160B1 and BP11-106M7.4) for potato chip fattiness, and 2 genes on chr 7 (EEPD1 and NPSR1-AS1) and 2 genes on chr 8 (RNU6-356P and SULf1) for potato chip liking reached genome-wide suggestive threshold (1e-5), but only one gene with a relatively lower P-value on each chromosome is reported in this table. Variants for potato chip liking shown in boldface were also detected by the uvGWAS across all corn oil concentrations. See Table 3 for abbreviations and other details.