REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit polyclonal anti-beta-actin | Cell Signaling Technology | Cat# 4967; RRID: AB_10695744 |
Rabbit polyclonal anti-Akt antibody | Cell Signaling Technology | Cat# 9272; RRID: AB_329827 |
Rabbit monoclonal anti-phospho-Akt (Ser473) | Cell Signaling Technology | Cat# 4060; RRID: AB_2315049 |
Rabbit polyclonal anti-PRAS40 | Cell Signaling Technology | Cat# 2610; RRID: AB_916206 |
Rabbit monoclonal anti-phospho-PRAS40 (Thr246) | Cell Signaling Technology | Cat# 2997; RRID: AB_2258110 |
Mouse monoclonal anti-S6 Ribosomal Protein | Cell Signaling Technology | Cat# 2317; RRID: AB_2238583 |
Rabbit polyclonal anti-phospho-S6 Ribosomal Protein (Ser235/236) | Cell Signaling Technology | Cat# 2211; RRID: AB_331679 |
Rabbit polyclonal anti-NDRG1 | Cell Signaling Technology | Cat# 5196; RRID: AB_10626626 |
Rabbit monoclonal anti-phospho-NDRG1 (Thr376) | Cell Signaling Technology | Cat# 5482; RRID: AB_10693451 |
Rabbit polyclonal anti-Raptor | Cell Signaling Technology | Cat# 2280; RRID: AB_561245 |
Rabbit polyclonal anti-Rictor | Cell Signaling Technology | Cat# 2140; RRID: AB_2179961 |
Rabbit monoclonal anti-mTOR | Cell Signaling Technology | Cat# 2983; RRID: AB_2105622 |
Rabbit polyclonal anti-P70 S6 Kinase | Cell Signaling Technology | Cat# 9202; RRID: AB_331676 |
Rabbit polyclonal anti-phospho-p70 S6 Kinase (Thr389) | Cell Signaling Technology | Cat# 9205; RRID: AB_330944 |
Rabbit polyclonal anti-4E-BP1 (53H11) | Cell Signaling Technology | Cat# 9644; RRID: AB_2097841 |
Rabbit polyclonal anti-phospho-4E-BP1 (Ser65) | Cell Signaling Technology | Cat# 9451; RRID: AB_330947 |
Rabbit monoclonal anti-Lamin B1 (D4Q4Z) | Cell Signaling Technology | Cat# 12586; RRID: AB_2650517 |
Rabbit polyclonal anti-phospho-PKC (pan) (βII Ser660) | Cell Signaling Technology | Cat# 9371; RRID: AB_2168219 |
Rabbit polyclonal anti-PKCdelta | Cell Signaling Technology | Cat# 2058; RRID: AB_10694655 |
Rabbit polyclonal anti-phospho-PKCdelta/theta (Ser643/676) | Cell Signaling Technology | Cat# 9376; RRID: AB_2168834 |
Rabbit polyclonal anti-RKIP (G38) | Cell Signaling Technology | Cat# 5060; RRID: AB_1904081 |
Rabbit polyclonal anti-c-Raf | Cell Signaling Technology | Cat# 9422; RRID: AB_390808 |
Rabbit monoclonal anti-phospho-c-Raf (Ser338) | Cell Signaling Technology | Cat# 9427; RRID: AB_2067317 |
Rabbit polyclonal anti-MEK1/2 | Cell Signaling Technology | Cat# 9122; RRID: AB_823567 |
Rabbit polyclonal anti-phospho-MEK1/2 (Ser217/Ser221) | Cell Signaling Technology | Cat# 9121; RRID: AB_331648 |
Rabbit polyclonal anti-p44/42 MAPK (Erk1/2) | Cell Signaling Technology | Cat# 9102; RRID: AB_330744 |
Rabbit polyclonal anti-phospho-p44/42 MAPK (Thr202/Tyr204) | Cell Signaling Technology | Cat# 9101; RRID: AB_331646 |
Rabbit polyclonal anti-p38 MAPK | Cell Signaling Technology | Cat# 9212; RRID: AB_330713 |
Rabbit polyclonal anti-phospho-p38 MAPK (Thr180/Tyr182) | Cell Signaling Technology | Cat# 9211; RRID: AB_331641 |
Rabbit polyclonal anti-cPLA2 | Cell Signaling Technology | Cat# 2832; RRID: AB_2164442 |
Rabbit polyclonal anti-phospho-cPLA2 (Ser505) | Cell Signaling Technology | Cat# 2831; RRID: AB_2164445 |
Rabbit monoclonal anti-HA-Tag | Cell Signaling Technology | Cat# 3724; RRID: AB_1549585 |
Rabbit monoclonal anti-GAPDH | Cell Signaling Technology | Cat# 2118; RRID: AB_561053 |
Rabbit polyclonal anti-PLCgamma1 | Cell Signaling Technology | Cat# 2822; RRID: AB_2163702 |
Rabbit polyclonal anti-phospho-PLCgamma1 (Tyr783) | Cell Signaling Technology | Cat# 2821; RRID: AB_330855 |
Rabbit polyclonal anti-phospho-threonine | Cell Signaling Technology | Cat# 9381; RRID: AB_330301 |
Rabbit polyclonal anti-IkBalpha | Cell Signaling Technology | Cat# 9242; RRID: AB_331623 |
Rabbit monoclonal anti-phospho-IkBalpha (Ser32) | Cell Signaling Technology | Cat# 2859; RRID: AB_561111 |
Rabbit monoclonal anti-Stat3 | Cell Signaling Technology | Cat# 4904; RRID: AB_331269 |
Rabbit polyclonal anti-phospho-Stat3 (Ser727) | Cell Signaling Technology | Cat# 9134; RRID: AB_331589 |
Rabbit monoclonal anti-PKD/PKCμ | Cell Signaling Technology | Cat# 90039; RRID: AB_2800149 |
Rabbit polyclonal anti-phospho-PKD/PKCμ (Ser744/748) | Cell Signaling Technology | Cat# 2054; RRID: AB_2172539 |
Mouse monoclonal anti-Rb (4H1) | Cell Signaling Technology | Cat# 9309; RRID: AB_823629 |
Rabbit monoclonal anti-estrogen inducible protein pS2 | Abcam | Cat# ab92377; RRID: AB_10562122 |
Rabbit polyclonal anti-PKCzeta | Abcam | Cat# ab59364; RRID: AB_944858 |
Rabbit monoclonal anti-phospho-PKCzeta (Thr560) | Abcam | Cat# ab62372; RRID: AB_946309 |
Rabbit polyclonal anti-PKCepsilon | Abcam | Cat# ab63638; RRID: AB_1142276 |
Rabbit polyclonal anti-phospho-PKCepsilon (Ser729) | Abcam | Cat# ab63387; RRID: AB_1142277 |
Rabbit monoclonal anti-secretory phospholipase A2 | Abcam | Cat# ab139692 |
Mouse monoclonal anti-PKCbeta II (F-7) | Santa Cruz Biotechnology | Cat# sc-13149; RRID: AB_628144 |
Mouse monoclonal anti-PKCzeta (B-7) | Santa Cruz Biotechnology | Cat# sc-393218 |
Mouse monoclonal anti-phospho-RKIP (Ser153) | Santa Cruz Biotechnology | Cat# sc-135779; RRID: AB_2163163 |
Normal rabbit IgG | Santa Cruz Biotechnology | Cat# sc-2027; RRID: AB_737197 |
Mouse monoclonal anti-phospho-Rb (Thr821/826) | Santa Cruz Biotechnology | Cat# sc-271930; RRID: AB_670923 |
Rabbit polyclonal anti-phospholipase A2 (iPLA2) | Sigma-Aldrich | Cat# SAB4200129; RRID: AB_11129638 |
Rabbit monoclonal anti-phospho-PKCzeta (Thr410) | Thermo Fisher Scientific | Cat# MA5-15060; RRID: AB_10983263 |
Mouse monoclonal anti-SREBP1 | BD Biosciences | Cat#557036; RRID: AB_396559 |
Goat anti-rabbit IgG (H+L)-HRP conjugate | Bio-Rad | Cat#170-6515; RRID: AB_11125142 |
Goat anti-mouse IgG (H+L)-HRP conjugate | Bio-Rad | Cat#170-6516; RRID: AB_11125547 |
Mouse polyclonal anti-Nkp46/ncr1 | R and D systems | Cat#AF2225; RRID: AB_355192 |
Rabbit monoclonal anti-Ki-67 (D3B5) | Cell Signaling Technology | Cat# 9129; RRID: AB_2687446 |
Goat anti-Mouse IgG (H+L) secondary antibody, Alexa Fluor 546 | Thermo Fisher Scientific | Cat# A-11003; RRID: AB_2534071 |
Phalloidin-iFluor 633 | Abcam | Cat# ab176758 |
Rabbit polyclonal anti-phospho-cPLA2 (Thr376) (Peptide name: PLA2G4A-369:383-pT376) | This paper (produced by Thermo Fisher Scientific) | Cat# UE1820P-T-AB1792 |
Bacterial and Virus Strains | ||
MAX Efficiency DH5α Competent Cells | Thermo Fisher Scientific | Cat#18258012 |
Biological Samples | ||
Primary human breast tissue | Imperial College Tissue Bank | Cat# IKB180 |
Primary human breast tissue | Imperial College Tissue Bank | Cat# IKB83 |
Primary human breast tissue | Imperial College Tissue Bank | Cat# IKB092 |
Primary human breast tissue | Imperial College Tissue Bank | Cat# IKB519 |
Primary human breast tissue | Imperial College Tissue Bank | Cat# IKB512 |
Primary human breast tissue | Imperial College Tissue Bank | Cat# IKB367 |
Primary human breast tissue | Imperial College Tissue Bank | Cat# IKB541 |
Primary human breast tissue | Imperial College Tissue Bank | Cat# IKB383 |
Primary human breast tissue | Imperial College Tissue Bank | Cat# IKB323 |
Primary human breast tissue | Imperial College Tissue Bank | Cat# IKB210 |
Primary human breast tissue | Imperial College Tissue Bank | Cat# IKB334 |
Primary human breast tissue | Imperial College Tissue Bank | Cat# IKB283 |
Breast PDX model | CrownBioscience | Cat# BR6695 |
Breast PDX model | CrownBioscience | Cat# BR5020 |
Breast PDX model | CrownBioscience | Cat# BR5009 |
Breast PDX model | CrownBioscience | Cat# BR5022 |
Breast PDX model | CrownBioscience | Cat# BR1282 |
Breast PDX model | CrownBioscience | Cat# BR5011 |
Breast PDX model | CrownBioscience | Cat# BR5014 |
Breast PDX model | CrownBioscience | Cat# BR5012 |
Breast PDX model | CrownBioscience | Cat# BR5017 |
Breast PDX model | CrownBioscience | Cat# BR5013 |
Breast PDX model | CrownBioscience | Cat# BR1474 |
Breast PDX model | CrownBioscience | Cat# BR3267 |
Breast PDX model | CrownBioscience | Cat# BR5010 |
Breast PDX model | CrownBioscience | Cat# BR5015 |
Breast PDX model | CrownBioscience | Cat# BR5337 |
Breast PDX model | CrownBioscience | Cat# BR1115 |
Breast PDX model | CrownBioscience | Cat# BR1283 |
Breast PDX model | CrownBioscience | Cat# BR1458 |
Breast PDX model | Champions Oncology | Cat# CTG1059 |
Breast PDX model | Champions Oncology | Cat# CTG1350 |
Breast PDX model | Champions Oncology | Cat# CTG1941 |
Breast PDX model | Champions Oncology | Cat# CTG2308 |
Breast PDX model | Champions Oncology | Cat# CTG0033 |
Breast PDX model | Champions Oncology | Cat# CTG0012 |
Breast PDX model | Champions Oncology | Cat# CTG0017 |
Breast PDX model | Champions Oncology | Cat# CTG0018 |
Breast PDX model | Champions Oncology | Cat# CTG0437 |
Breast PDX model | Champions Oncology | Cat# CTG0473 |
Ovarian PDX model | Champions Oncology | Cat# CTG0253 |
Ovarian PDX model | Champions Oncology | Cat# CTG1423 |
Ovarian PDX model | Champions Oncology | Cat# CTG1602 |
Ovarian PDX model | Champions Oncology | Cat# CTG1627 |
Ovarian PDX model | Champions Oncology | Cat# CTG0252 |
Ovarian PDX model | Champions Oncology | Cat# CTG0258 |
Ovarian PDX model | Champions Oncology | Cat# CTG0259 |
Ovarian PDX model | Champions Oncology | Cat# CTG0486 |
Pancreatic PDX model | Champions Oncology | Cat# CTG0292 |
Pancreatic PDX model | Champions Oncology | Cat# CTG0381 |
Pancreatic PDX model | Champions Oncology | Cat# CTG0391 |
Pancreatic PDX model | Champions Oncology | Cat# CTG1485 |
Pancreatic PDX model | Champions Oncology | Cat# CTG2205 |
Pancreatic PDX model | Champions Oncology | Cat# CTG0282 |
Pancreatic PDX model | Champions Oncology | Cat# CTG0283 |
Pancreatic PDX model | Champions Oncology | Cat# CTG0284 |
Pancreatic PDX model | Champions Oncology | Cat# CTG0285 |
Pancreatic PDX model | Champions Oncology | Cat# CTG0286 |
Sarcoma PDX model | Champions Oncology | Cat# CTG0886 |
Sarcoma PDX model | Champions Oncology | Cat# CTG1084 |
Sarcoma PDX model | Champions Oncology | Cat# CTG1116 |
Sarcoma PDX model | Champions Oncology | Cat# CTG1255 |
Sarcoma PDX model | Champions Oncology | Cat# CTG1628 |
Sarcoma PDX model | Champions Oncology | Cat# CTG0142 |
Sarcoma PDX model | Champions Oncology | Cat# CTG0143 |
Sarcoma PDX model | Champions Oncology | Cat# CTG0241 |
Sarcoma PDX model | Champions Oncology | Cat# CTG0242 |
Sarcoma PDX model | Champions Oncology | Cat# CTG0243 |
Colorectal PDX model | Champions Oncology | Cat# CTG0083 |
Colorectal PDX model | Champions Oncology | Cat# CTG0129 |
Colorectal PDX model | Champions Oncology | Cat# CTG0360 |
Colorectal PDX model | Champions Oncology | Cat# CTG0706 |
Colorectal PDX model | Champions Oncology | Cat# CTG0799 |
Colorectal PDX model | Champions Oncology | Cat# CTG0058 |
Colorectal PDX model | Champions Oncology | Cat# CTG0062 |
Colorectal PDX model | Champions Oncology | Cat# CTG0063 |
Colorectal PDX model | Champions Oncology | Cat# CTG0065 |
Colorectal PDX model | Champions Oncology | Cat# CTG0066 |
Chemicals, Peptides, and Recombinant Proteins | ||
Hydrocortisone | Sigma-Aldrich | Cat# H-0888 |
Insulin-transferrin-selenium | GIBCO | Cat# 41400-045 |
Epidermal growth factor (EGF) | Peprotech | Cat# AF-100-15 |
Cholera toxin | Sigma-Aldrich | Cat# C-8052 |
Insulin | Sigma-Aldrich | Cat# I-1882 |
Fatty acid free bovine serum albumin | Sigma-Aldrich | Cat# A8806 |
PKC zeta pseudosubstrate inhibitory peptide | Sigma-Aldrich | Cat# P1614 |
PKC beta II peptide inhibitor | Sigma-Aldrich | Cat# P-0102 |
FIPI hydrochloride hydrate | Sigma-Aldrich | Cat# F5808 |
4-hydroxytamoxifen | Sigma-Aldrich | Cat# T176 |
Bromoenol lactone | Sigma-Aldrich | Cat# B1552 |
Cycloheximide | Sigma-Aldrich | Cat# C7698 |
Doxycycline hyclate | Sigma-Aldrich | Cat# D9891 |
Arachidonic acid | Sigma-Aldrich | Cat# 10931 |
Palmitoleate | Sigma-Aldrich | Cat# P9417 |
Palmitate | Sigma-Aldrich | Cat# P0500 |
PKC alpha (C2-4) inhibitor peptide | Santa Cruz Biotechnology | Cat# sc-304 |
PKC epsilon inhibitor peptide | Cambridge Bioscience | Cat# CAY17476 |
Rapamycin | Selleckchem | Cat# S1039 |
Torin 1 | Selleckchem | Cat#S2827 |
BYL719 | Selleckchem | Cat# S2814 |
BKM120 | Selleckchem | Cat# 2247 |
MK2206 | Selleckchem | Cat# S1078 |
GSK690693 | Selleckchem | Cat# S1113 |
GSK650394 | Tocris Bioscience | Cat# 3572 |
U73122 | Tocris Bioscience | Cat# 1268 |
ASB14780 | Axon Medchem | Cat# 2578 |
DharmaFECT-1 transfection reagent | Dharmacon | Cat# T-2001-02 |
FuGENE HD Transfection reagent | Promega | Cat# E2311 |
Lipid Removal Adsorbent | Supelco | Cat# 13358 |
Matrigel | Corning | Cat# 354230 |
Paraformaldehyde | Sigma-Aldrich | Cat# 158127 |
Triton X-100 | Sigma-Aldrich | Cat# X100 |
DAPI (4’,6-Diamidino-2-Phenylindole, Dihydrochloride) | Thermo Fisher Scientific | Cat# D1306 |
RIPA buffer | Thermo Fisher Scientific | Cat# 89900 |
Leupeptin | Sigma-Aldrich | Cat# L2884 |
Pepstatin | Sigma-Aldrich | Cat# P5318 |
Na3VO4 | Sigma-Aldrich | Cat# 450243 |
DL-Dithiothreitol | Sigma-Aldrich | Cat# 646653 |
Calyculin A | Cell Signaling Technology | Cat# 9902 |
Beta-glycerophosphate | Sigma-Aldrich | Cat# G9422 |
PMSF protease inhibitor | Cell Signaling Technology | Cat# 8553 |
Bradford reagent | Bio-Rad | Cat# 5000006 |
ALLN protease inhibitor | Merck-Millipore | Cat# 208719 |
2x Laemmli sample buffer | Bio-Rad | Cat# 161-0737 |
4x Laemmli sample buffer | Bio-Rad | Cat# 161-0747 |
10X Cell lysis buffer | Cell Signaling Technology | Cat# 9803 |
Recombinant human protein kinase C zeta | Insight Biotechnology | Cat# TP302472 |
Recombinant human phospholipase A2, group IVA | Insight Biotechnology | Cat# TP320972 |
Magnesium chloride | Sigma-Aldrich | Cat# M8266 |
Bovine serum albumin | Sigma-Aldrich | Cat# A2153 |
Puromycin | Invivogen | Cat# ant-pr-1 |
Blasticidin | Invivogen | Cat# ant-bl-1 |
Critical Commercial Assays | ||
QuikChange Lightning Site-Directed Mutagenesis Kit | Agilent | Cat# 210518 |
CellTiter96 Aqueous Non-radioactive (MTS) cell proliferation assay | Promega | Cat# G5430 |
Fatty Acid Uptake Kit | Sigma-Aldrich | Cat# MAK156 |
Cytosolic Phospholipase A2 Assay Kit | Abcam | Cat# ab133090 |
Secretory Phospholipase A2 Assay Kit | Abcam | Cat# ab133089 |
Diacylglycerol (DAG) Assay Kit | Cell Biolabs Inc | Cat# MET-5028 |
Active Rac1 Detection Kit | Cell Signaling Technology | Cat# 8815 |
Duolink In Situ Detection Reagents Red Kit | Sigma-Aldrich | Cat# DUO92008 |
Minus and Plus PLA probes | Sigma-Aldrich | Cat# DUO92004 and DUO92002 |
Fluo-4 Direct Calcium Assay Kit | Thermo Fisher Scientific | Cat# F10471 |
RNeasy Plus Mini Kit | QIAGEN | Cat# 74134 |
QuantiTect Reverse Transcription Kit | QIAGEN | Cat#205311 |
SYBR Select Master Mix | Thermo Fisher Scientific | Cat# 4472908 |
QIAamp DNA mini kit | QIAGEN | Cat# 51304 |
PNAClamp PIK3CA Mutation Detection Kit | Panagene | Cat# PNAC-4001 |
ADP-Glo Kinase Assay | Promega | Cat# V6930 |
Arachidonic Acid ELISA Kit | Generon | Cat# CEB098Ge |
Prostaglandin E2 ELISA Kit | Enzo Life Sciences | Cat# ADI-900-001 |
Mouse RANTES (CCL5) ELISA Kit | Abcam | Cat# ab100739 |
Mouse Fractalkine (CX3CL1) ELISA Kit | Abcam | Cat# ab100683 |
Pierce BCA Protein Assay Kit | Thermo Fisher Scientific | Cat# 23225 |
Deposited Data | ||
Custom script for quantification of proximity ligation assay images | This manuscript | Github: https://github.com/adamltyson/foci2D |
Custom script for quantification of acini images | This manuscript | Github: https://github.com/adamltyson/cell-coloc-3D |
Custom script for quantification of calcium flux | This manuscript | Github: https://github.com/adamltyson/CalciumAnalysis |
REIMS data for Figure 1D | This manuscript | Mendeley Data; https://doi.org/10.17632/xcgc5kpntm.1 |
REIMS data for Figure 1E | This manuscript | Mendeley Data; https://doi.org/10.17632/xcgc5kpntm.1 |
REIMS data for Figure 1H | This manuscript | Mendeley Data; https://doi.org/10.17632/xcgc5kpntm.1 |
REIMS data for Figure 3B | This manuscript | Mendeley Data; https://doi.org/10.17632/xcgc5kpntm.1 |
REIMS data for Figure 3D | This manuscript | Mendeley Data; https://doi.org/10.17632/xcgc5kpntm.1 |
Significantly altered phospholipids across breast cancer cell lines of different receptor, or triple negative status | This manuscript | Table S1 |
Significantly different fatty acids between MCF10A PIK3CA wild-type and E545K/H1047R mutant cells | This manuscript | Table S4 |
Experimental Models: Cell Lines | ||
Human PIK3CA (H1047R/+) MCF10A | Horizon Discovery | Cat# HD 101-011 |
Human PIK3CA (E545K/+) MCF10A | Horizon Discovery | Cat# HD 101-002 |
AU565 (human breast carcinoma) | ATCC | Cat# CRL-2351; RRID: CVCL_1074 |
BT20 (human breast carcinoma) | ATCC | Cat# HTB-19; RRID: CVCL_0178 |
BT474 (human breast carcinoma) | ATCC | Cat# HTB-20; RRID: CVCL_0179 |
BT549 (human breast carcinoma) | ATCC | Cat# HTB-122; RRID: CVCL_1092 |
CAL51 (human breast carcinoma) | DSMZ | Cat# ACC-302; RRID: CVCL_1110 |
CAMA1 (human breast carcinoma) | ATCC | Cat# HTB-21; RRID: CVCL_1115 |
EFM19 (human breast carcinoma) | DSMZ | Cat# ACC-231; RRID: CVCL_0253 |
Hs578T (human breast carcinoma) | ATCC | Cat# HTB-126; RRID: CVCL_0332 |
JIMT1 (human breast carcinoma) | DSMZ | Cat# ACC-589; RRID: CVCL_2077 |
KPL1 (human breast carcinoma) | DSMZ | Cat# ACC-317; RRID: CVCL_2094 |
MCF7 (human breast carcinoma) | ATCC | Cat# HTB-22; RRID: CVCL_0031 |
MDAMB134 (human breast carcinoma) | ATCC | Cat# HTB-23; RRID: CVCL_0617 |
MDAMB157 (human breast carcinoma) | ATCC | Cat# HTB-24; RRID: CVCL_0618 |
MDAMB231 (human breast carcinoma) | ATCC | Cat# HTB-26; RRID: CVCL_0062 |
MDAMB361 (human breast carcinoma) | ATCC | Cat# HTB-27; RRID: CVCL_0620 |
MDAMB436 (human breast carcinoma) | ATCC | Cat# HTB-130; RRID: CVCL_0623 |
MDAMB453 (human breast carcinoma) | ATCC | Cat# HTB-131; RRID: CVCL_0418 |
MDAMB468 (human breast carcinoma) | ATCC | Cat# HTB-132; RRID: CVCL_0419 |
MFM223 (human breast carcinoma) | DSMZ | Cat# ACC-422; RRID: CVCL_1408 |
S68 (human breast carcinoma) | Breast Cancer Now (Institute of Cancer Research) | RRID: CVCL_5585 |
SKBR3 (human breast carcinoma) | ATCC | Cat# HTB-30; RRID: CVCL_0033 |
T47D (human breast carcinoma) | ATCC | Cat# HTB-133; RRID: CVCL_0553 |
UACC812 (human breast carcinoma) | ATCC | Cat# CRL-1897; RRID: CVCL_1781 |
VP229 (human breast carcinoma) | Breast Cancer Now (Institute of Cancer Research) | RRID: CVCL_2754 |
BT483 (human breast carcinoma) | ATCC | Cat# HTB-121; RRID: CVCL_2319 |
HCC1143 (human breast carcinoma) | ATCC | Cat# CRL-2321; RRID: CVCL_1245 |
HCC1395 (human breast carcinoma) | ATCC | Cat# CRL-2324; RRID: CVCL_1249 |
HCC1428 (human breast carcinoma) | ATCC | Cat# CRL-2327; RRID: CVCL_1252 |
HCC1500 (human breast carcinoma) | ATCC | Cat# CRL-2329; RRID: CVCL_1254 |
HCC1569 (human breast carcinoma) | ATCC | Cat# CRL-2330; RRID: CVCL_1255 |
HCC1937 (human breast carcinoma) | ATCC | Cat# CRL-2336; RRID: CVCL_0290 |
HCC1954 (human breast carcinoma) | ATCC | Cat# CRL-2338; RRID: CVCL_1259 |
HCC202 (human breast carcinoma) | ATCC | Cat# CRL-2316; RRID: CVCL_2062 |
HCC38 (human breast carcinoma) | ATCC | Cat# CRL-2314; RRID: CVCL_1267 |
HCC70 (human breast carcinoma) | ATCC | Cat# CRL-2315; RRID: CVCL_1270 |
SUM52 (human breast carcinoma) | Breast Cancer Now (Institute of Cancer Research) | RRID: CVCL_3425 |
ZR751 (human breast carcinoma) | ATCC | Cat# CRL-1500; RRID: CVCL_0588 |
ZR7530 (human breast carcinoma) | ATCC | Cat# CRL-1504; RRID: CVCL_1661 |
SUM44 (human breast carcinoma) | Breast Cancer Now (Institute of Cancer Research) | RRID: CVCL-3424 |
SUM159 (human breast carcinoma) | Breast Cancer Now (Institute of Cancer Research) | RRID: CVCL_5423 |
SUM149 (human breast carcinoma) | Breast Cancer Now (Institute of Cancer Research) | RRID: CVCL_3422 |
SUM225 (human breast carcinoma) | Breast Cancer Now (Institute of Cancer Research) | RRID: CVCL_5593 |
SUM229 (human breast carcinoma) | Breast Cancer Now (Institute of Cancer Research) | RRID: CVCL_5594 |
HEK293T (human embryonic kidney) | ATCC | Cat# CRL-3216; RRID: CVCL_0063 |
Human MCF10A PIK3CA WT CRISPR control cell line | This manuscript | N/A |
Human MCF10A PIK3CA WT cPLA2 CRISPR cell line | This manuscript | N/A |
Human MCF10A PIK3CA H1047R (+/) CRISPR control cell line | This manuscript | N/A |
Human MCF10A PIK3CA H1047R (+/−) cPLA2 CRISPR cell line | This manuscript | N/A |
Experimental Models: Organisms/Strains | ||
Mouse: BALB/c nude (female, age: 6–8 weeks) | Beijing Anikeeper Biotech (Beijing, China) | N/A |
Mouse: BALB/c nude (female, age: 7–9 weeks) | Envigo | N/A |
Oligonucleotides | ||
Primers for cPLA2 shRNA amplification (Forward 5′-GTGGAAAGGACGAAACACCGGT-3′, Reverse 5′-TTTGTCTCGAGGTCGAGAATTC-3′ | Sigma-Aldrich | N/A |
Mutagenesis primers to generate cPLA2 S505A (Forward 5′-GCAAAGTCACTCAAAGGAGCCAGTG GATAAGATGTATTG-3′, Reverse 5′-CAATACATCTTATCCACTGGCTCCTTT GAGTGACTTTGC-3′ |
Sigma-Aldrich | N/A |
Mutagenesis primers to generate cPLA2 T376A (Forward 5′-TTCTTC ATACTTCTTAACGACTGCTCCCATAAAAA ATTTGCTTCCAA-3′, Reverse 5′-TTGGAAGCAAATTT TTTATGGGAGCAGTCGTTAAG AAGTATGAAGAA-3′ |
Sigma-Aldrich | N/A |
qPCR primers for human cPLA2 (PLA2G4A) (Forward 5′-GATGAAACTCTAGGGACAGCAAC-3′, Reverse 5′-CTGGGCATGAGCAAACTTCAA-3′ | Sigma-Aldrich | N/A |
qPCR primers for human beta-actin (Forward 5′-GACCCAGATCATGTTTGAGACC-3′, Reverse 5′-CTTCATGAGGTAGTCAGTCAGG-3′) | Sigma-Aldrich | N/A |
Recombinant DNA | ||
pLKO-Tet-On Vector | Wiederschain et al., 2009 | Addgene ID: 21915 |
pCMV3-HA-PLA2G4A | Sino Biological | Cat# HG13126-NY |
RICTOR ON-TARGETplus SMARTPool human siRNA | Dharmacon | Cat# L-016984-00-0005 |
RAPTOR ON-TARGETplus SMARTPool human siRNA | Dharmacon | Cat# L-004107-00-0005 |
FRAP1 ON-TARGETplus SMARTPool human siRNA | Dharmacon | Cat# L-003008-00-0005 |
PLCγ1 ON-TARGETplus SMARTPool human siRNA | Dharmacon | Cat# L-003559-00-0005 |
PRKCZ ON-TARGETplus SMARTPool human siRNA | Dharmacon | Cat# L-003526-00-0005 |
Non-targeting siRNA control | Dharmacon | Cat# D-001810-01-05 |
TRC Lentiviral eGFP shRNA positive control | Dharmacon | Cat# RHS4459 |
TRC Lentiviral Human PLA2G4A shRNA 1 | Dharmacon | Cat# TRCN0000050263 |
TRC Lentiviral Human PLAG2G4A shRNA 5 | Dharmacon | Cat# TRCN0000050267 |
LentiCRISPR v2 | Sanjana et al., 2014 | Addgene ID: 52961 |
PLA2G4A sgRNA CRISPR/Cas9 All-in-One Lentivector Target 2 | Applied Biological Materials | Cat# K1659207 |
pCMV-HA-PLA2G4A-S505A | This manuscript | N/A |
pCMV-HA-PLA2G4A-T376A | This manuscript | N/A |
Inducible pLKO-Tet-On-TRC Lentiviral Human PLA2G4A shRNA 1 | This manuscript | N/A |
Software and Algorithms | ||
R statistical software (version 3.5.1) | The R Project | https://www.r-project.org/ |
ProteoWizard MsConvert software (version 3.0.11781) | Chambers et al., 2012 | http://proteowizard.sourceforge.net/download.html |
MALDIquant package | Gibb and Strimmer, 2012 | https://cran.r-project.org/web/packages/MALDIquant/index.html |
ReactomePA package | Yu and He, 2016 | https://bioconductor.org/packages/release/bioc/html/ReactomePA.html |
MATLAB (2014a, version 8.3.0.532) | Mathworks | https://www.mathworks.com/products/matlab.html |
GraphPad Prism (version 8.0.1) | GraphPad | https://www.graphpad.com/scientific-software/prism/ |
Database for Annotation, Visualization and Integrated Discovery (DAVID, version 6.8) | Huang et al., 2009 | https://david.ncifcrf.gov/ |
TargetLynx software | Waters Corporation | https://www.waters.com/waters/home.htm |
Image Lab Software (version 5.2.1) | Bio-Rad | https://www.bio-rad.com/en-uk/product/image-lab-software?ID=KRE6P5E8Z |
ImageJ (version 1.51) | NIH | https://imagej.nih.gov/ij/download.html |
Other | ||
Protein G Sepharose beads | Sigma-Aldrich | Cat# P3296 |
Dulbecco’s Modified Eagle’s Medium (DMEM) | GIBCO | Cat# 41965-039 |
Roswell Park Memorial Institute (RPMI) 1640 | GIBCO | Cat# 10220-106 |
Ham’s F12 media | Thermo Fisher Scientific | Cat# 11765054 |
DMEM/F-12 | GIBCO | Cat# 31330-038 |
Horse Serum | Thermo Fisher Scientific | Cat# 16050-122 |
4–15% Criterion TGX Precast Midi Protein Gel | Bio-Rad | Cat# 5671084 |
4–15% Mini-PROTEAN TGX Precast Protein Gel | Bio-Rad | Cat# 4561083 |
Electrosurgical bipolar forceps | Erbe Elektromedizin (Germany) | N/A |
ForceTriad electrosurgical unit | Covidien (Ireland) | N/A |
Thermo Exactive orbitrap instrument | Thermo Scientific | N/A |
Waters HSS T3 UPLC column | Waters Corporation | Cat# 186005614 |
Waters Xevo TQ-S triple quadrupole mass spectrometer | Waters Corporation | N/A |
Normal diet (for PDX study) | Keaoxieli Feed (Beijing, China) | Cat# 2152 |
Fat free diet (for PDX study) | Xietong Organism (Beijing, China) | Cat# RD17112401 |
Western diet (omega-3/omega-6 = 1:50) (For cell line xenograft study) | Research Diets | Cat# D19032707 |
Balanced diet (omega-3/omega-6 = 1:1) (For cell line xenograft study) | Research Diets | Cat# D19032708 |
Fat free diet (For xenograft study) | Research Diets | Cat# D19032705 |
Precellys Lysing Soft tissue homogenizing kit | Precellys | Cat# P000912-LYSK0 |
Precellys24 homogenizer | Bertin Instruments | Cat# P000669-PR240-A |