TABLE 3.
Distribution of SNPs with p < 10–5 to regions. BC, breast cancer. MA, meta-analysis.
| Regions | Novel region | SNPs | Genotyped/imputed | SNPS in MA of overall BC | SNPs in MA of ER- | SNPs in MA of ER+ |
| lncRNA-2 | No | 125 | 23/102 | 125 | 0 | 110 |
| lncRNA-17 | Yes | 2 | 0/2 | 2 | 0 | 0 |
| lncRNA-26 | Yes | 20 | 0/20 | 20 | 0 | 0 |
| lncRNA-43 | No | 129 | 9/120 | 114 | 0 | 107 |
| lncRNA-45 | Yes | 1 | 0/1 | 1 | 0 | 0 |
| lncRNA-49 | Yes | 1 | 0/1 | 0 | 1 | 0 |
| lncRNA-69 | No | 234 | 122/112 | 189 | 70 | 116 |
| lncRNA-75 | Yes | 20 | 3/17 | 20 | 0 | 0 |
| lncRNA-82 | Yes | 1 | 0/1 | 1 | 0 | 1 |
| lncRNA-92 | No | 34 | 15/19 | 32 | 0 | 32 |
| lncRNA-98 | No | 16 | 11/5 | 13 | 0 | 16 |
| lncRNA-103 | Yes | 9 | 0/9 | 9 | 0 | 0 |
| uc.1 | No | 180 | 0/180 | 180 | 179 | 52 |
| uc.2 | No | 2 | 0/2 | 2 | 1 | 0 |
| uc.2/3 | No | 2 | 0/2 | 2 | 0 | 0 |
| uc.2/3/4 | No | 9 | 0/9 | 7 | 2 | 0 |
| uc.22/23 | No | 1 | 0/1 | 1 | 0 | 0 |
| uc.23/24 | No | 1 | 0/1 | 1 | 0 | 0 |
| uc.24 | No | 2 | 0/2 | 2 | 0 | 0 |
| uc.24/25 | No | 2 | 0/2 | 2 | 0 | 0 |
| uc.25 | No | 7 | 0/7 | 7 | 0 | 0 |
| uc.29 | No | 11 | 0/11 | 1 | 0 | 11 |
| uc.61 | Yes | 16 | 0/16 | 16 | 0 | 0 |
| uc.98/99 | No | 11 | 0/11 | 8 | 0 | 11 |
| uc.147 | Yes | 32 | 0/32 | 29 | 17 | 0 |
| uc.148/149 | Yes | 1 | 0/1 | 0 | 1 | 0 |
| uc.152 | No | 2 | 0/2 | 1 | 0 | 2 |
| uc.162 | No | 33 | 5/28 | 33 | 15 | 0 |
| uc.168 | No | 15 | 2/13 | 15 | 0 | 0 |
| uc.175 | No | 85 | 0/85 | 85 | 23 | 79 |
| uc.184 | Yes | 57 | 0/57 | 57 | 0 | 0 |
| uc.201 | Yes | 1 | 0/1 | 1 | 0 | 0 |
| uc.245 | No | 57 | 0/57 | 52 | 0 | 57 |
| uc.250 | Yes | 43 | 0/43 | 43 | 0 | 0 |
| uc.313 | Yes | 46 | 0/46 | 46 | 0 | 8 |
| uc.386 | Yes | 1 | 0/1 | 1 | 0 | 0 |
| uc.401 | No | 60 | 0/60 | 5 | 15 | 55 |