TABLE 5.
SNPs that both have INQUISIT predicted target genes and have eQTL associations.
Variant | Gene | Region | MAF | OR (95%CI) BCAC | p BCAC | p eQTL | eQTL |
rs71124350 | GABPB1-AS1 | lncRNA-75 | 0.3354 | 0.97 (0.957–0.983) | 0.00000784 | 2.41918E-07 | GTEx |
rs28489579 | GABPB1-AS1 | lncRNA-75 | 0.3444 | 0.97 (0.957–0.983) | 0.000005277 | 1.56507E-13 | GTEx |
rs17695092 | CPEB4 | uc.184 | 0.3149 | 0.969 (0.956–0.982) | 0.000002644 | 7.33215E-61 | METABRIC |
rs3009879 | TIAL1 | uc.313 | 0.4089 | 1.03 (1.017–1.043) | 0.000003064 | 0.001347099 | METABRIC |