Table 3. Genetic map description and comparison with physical distance based on the A. hypogaea reference genome.
| Chr | LG | No. SNPs | No. SSRs | Total No.Loci | Genetic Length (cM) | Average loci interval (cM) | No. Loci aligned to the respective pseudomolecule on the A. hypogaea reference genome | Physical Length (Mbp) | Average physical interval (Mbp) | Total length A. hypogaea genome (Mbp) | Coverage ratio | Recombination rate (cM/Mbp) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A01 | A01 | 56 | 8 | 64 | 132.4 | 2.1 | 54 | 106.21 | 2.00 | 112.42 | 0.94 | 1.18 |
| A02 | A02 | 22 | 1 | 23 | 62.4 | 2.8 | 18 | 4.09 | 0.24 | 102.98 | 0.04 | 0.61 |
| A03 | A03_1 | 28 | 1 | 29 | 93.3 | 3.3 | 21 | 6.91 | 0.35 | 143.81 | 0.05 | 0.65 |
| A03_2 | 7 | 1 | 8 | 29.4 | 4.2 | 6 | 3.00 | 0.60 | 143.81 | 0.02 | 0.20 | |
| A03_B03 | 107 | 9 | 116 | 207.5 | 1.8 | 83 | 132.91 | 1.62 | 143.81 | 0.92 | 1.44 | |
| A04 | A04 | 132 | 1 | 133 | 298.7 | 2.3 | 96 | 127.52 | 1.34 | 128.80 | 0.99 | 2.32 |
| A05 | A05_B05 | 104 | 6 | 110 | 212.9 | 2.0 | 105 | 114.38 | 1.10 | 115.93 | 0.99 | 1.84 |
| A06 | A06 | 69 | 4 | 73 | 145.7 | 2.0 | 71 | 107.46 | 1.54 | 115.50 | 0.93 | 1.26 |
| A07 | A07 | 67 | 5 | 72 | 99.3 | 1.4 | 54 | 70.42 | 1.33 | 81.12 | 0.87 | 1.22 |
| A07_B07 | 10 | 0 | 10 | 22.4 | 2.5 | 8 | 0.58 | 0.08 | 81.12 | 0.007 | 0.28 | |
| A08 | A08 | 59 | 3 | 62 | 185.1 | 3.0 | 56 | 40.02 | 0.73 | 51.90 | 0.77 | 3.57 |
| A08_B08 | 5 | 0 | 5 | 4.5 | 1.1 | 5 | 0.01 | 0.00 | 51.90 | 0.0002 | 0.09 | |
| A09 | A09 | 80 | 4 | 84 | 183.7 | 2.2 | 72 | 117.03 | 1.65 | 120.52 | 0.97 | 1.52 |
| A10 | A10 | 5 | 0 | 5 | 17.6 | 4.4 | 5 | 1.44 | 0.36 | 117.09 | 0.01 | 0.15 |
| B01 | B01 | 48 | 2 | 50 | 126.6 | 2.6 | 40 | 100.39 | 2.57 | 149.30 | 0.67 | 0.85 |
| B02 | B02 | 96 | 5 | 101 | 225.0 | 2.3 | 95 | 113.00 | 1.20 | 120.58 | 0.94 | 1.87 |
| B03 | B03 | 20 | 0 | 20 | 117.5 | 6.2 | 20 | 10.22 | 0.54 | 146.73 | 0.07 | 0.80 |
| B04 | B04 | 98 | 4 | 102 | 176.9 | 1.8 | 87 | 139.23 | 1.62 | 143.24 | 0.97 | 1.23 |
| B05 | B05 | 9 | 1 | 10 | 28.6 | 3.2 | 5 | 1.10 | 0.27 | 160.88 | 0.01 | 0.18 |
| B06 | B06_1 | 69 | 2 | 71 | 203.0 | 2.9 | 63 | 151.63 | 2.45 | 154.81 | 0.98 | 1.31 |
| B06_2 | 54 | 0 | 54 | 52.9 | 1.0 | 43 | 4.56 | 0.11 | 154.81 | 0.03 | 0.34 | |
| B07 | B07_1 | 82 | 4 | 86 | 149.9 | 1.8 | 71 | 131.45 | 1.88 | 134.92 | 0.97 | 1.11 |
| B07_2 | 5 | 0 | 5 | 9.9 | 2.5 | 5 | 21.19 | 5.30 | 134.92 | 0.16 | 0.07 | |
| B08 | B08_1 | 10 | 0 | 10 | 37.6 | 4.2 | 8 | 3.51 | 0.50 | 135.15 | 0.03 | 0.28 |
| B08_2 | 5 | 2 | 7 | 25.3 | 4.2 | 5 | 111.04 | 27.76 | 135.15 | 0.82 | 0.19 | |
| B09 | B09 | 98 | 4 | 102 | 248.6 | 2.5 | 82 | 157.62 | 1.95 | 158.63 | 0.99 | 1.57 |
| B10 | B10 | 30 | 2 | 32 | 128.9 | 4.2 | 29 | 130.93 | 4.68 | 143.98 | 0.91 | 0.90 |
| A07_B08 | A07_B08 | 7 | 0 | 7 | 6.7 | 1.1 | 7 | 0.33 | 0.05 | — | — | — |
| A10_B04 | A10_B04 | 69 | 4 | 73 | 149.8 | 2.1 | 55 | 99.94 | 1.85 | — | — | — |
| Mean | 50 | 2.5 | 53 | 116.6 | 2.7 | 44 | 69.25 | 2.26 | 125.33 | 0.56 | 0.93 | |
| Total | 1451 | 73 | 1524 | 3382.0 | 77.4 | 1269 | 2008.13 | 65.67 | 3383.81 | 15.06 | 27.02 |