Table 2. Transposable element and repetitive DNA sequences from A. rabiei ArME14.
| Class | Type | Number of sequences | % of total sequences | Total nucleotides | % of total nucleotides | Average size |
|---|---|---|---|---|---|---|
| I | LTR | 780 | 43 | 3336780 | 54 | 4278 |
| LINE | 177 | 9.7 | 450418 | 7.3 | 2545 | |
| LARD | 26 | 1.4 | 194939 | 3.2 | 7498 | |
| TRIM | 5 | 0.3 | 5668 | 0.1 | 1134 | |
| SINE | 2 | 0.1 | 1034 | 0.02 | 517 | |
| II | TIR | 683 | 38 | 1820841 | 30 | 2666 |
| Helitron | 44 | 2.4 | 171920 | 2.8 | 3907 | |
| MITE | 7 | 0.4 | 4193 | 0.1 | 599 | |
| SSR | No cat a | 82 | 4.5 | 137974 | 2.2 | 1682 |
| Host gene a | 4 | 0.2 | 8223 | 0.1 | 2056 | |
| SSR | 6 | 0.3 | 5102 | 0.1 | 2056 | |
| Total | 1,816 | 100 | 6,137,092 | 100 |
a
“No Cat” and “Host gene” are categories assigned by the PiRATE Galaxy server, and describe unclassified (no category) and potential host gene, respectively.