Table 3. Summary of potential pathogenicity genome features, including: secondary metabolite clusters, predicted effector genes and CAZyme genes identified from the A. rabiei ArME14 genome assembly. Detailed tables are provided in Supplementary File, File_S4.
Class | Number |
---|---|
Putative effectors | |
EffP > 0.8, MW < 25KDa a | 39 |
EffP > 0.8, MW < 15KDa a | 27 |
EffP > 0.9, MW < 15KDa a | 15 |
Secondary metabolite clusters | 26 |
T1PKS | 7 |
T3PKS | 1 |
NRPS | 2 |
NRPS-like | 7 |
NRPS/NRPS-like – T1PKS | 4 |
Indole | 1 |
Terpene | 4 |
CAZymes | 451 |
AA - Auxiliary activities | 77 |
CBM - Carbohydrate-binding module | 3 |
CE - Carbohydrate esterase | 31 |
GH - Glycoside hydrolase | 227 |
GT - Glycosyl transferase | 82 |
PL - Polysaccharide lyase | 31 |
mature protein MW.