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. 2020 Apr 28;10(7):2131–2140. doi: 10.1534/g3.120.401265

Table 3. Summary of potential pathogenicity genome features, including: secondary metabolite clusters, predicted effector genes and CAZyme genes identified from the A. rabiei ArME14 genome assembly. Detailed tables are provided in Supplementary File, File_S4.

Class Number
Putative effectors
EffP > 0.8, MW < 25KDa a 39
EffP > 0.8, MW < 15KDa a 27
EffP > 0.9, MW < 15KDa a 15
Secondary metabolite clusters 26
T1PKS 7
T3PKS 1
NRPS 2
NRPS-like 7
NRPS/NRPS-like – T1PKS 4
Indole 1
Terpene 4
CAZymes 451
AA - Auxiliary activities 77
CBM - Carbohydrate-binding module 3
CE - Carbohydrate esterase 31
GH - Glycoside hydrolase 227
GT - Glycosyl transferase 82
PL - Polysaccharide lyase 31
a

mature protein MW.