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Characterization of LR insertions and deletions using RepeatMasker.
| Classification | Number | Percentage |
|---|---|---|
| Tandem repeat total | 8847 | 21.48 |
| Simple repeat | 7167 | 17.4 |
| Low complexity repeat | 1595 | 3.87 |
| Satellite | 75 | 0.18 |
| rRNA | 5 | <0.05 |
| tRNA | 3 | <0.05 |
| Macrosatellite | 1 | <0.05 |
| Interspersed repeat total | 10,828 | 26.3 |
| LTR retrotransposon | 9692 | 23.53 |
| LINE/CR1 retrotransposon | 1123 | 2.27 |
| SINE retrotransposon | 11 | <0.05 |
| DNA/hAT-Charlie element | 2 | <0.05 |
| No match | 21,492 | 52.19 |
