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Comparison of TopPIC search results for TopFD+EnvCNN and TopFD+MS-Deconv on the ZF data set. (a) PrSMs reported by TopPIC without mass shifts. (b) PrSMs reported by TopPIC when one unexpected mass shift is allowed in a proteoform. (c) Difference between the numbers of matched EnvCNN and MS-Deconv masses in PrSM without mass shifts. (d) Difference between the numbers of matched EnvCNN and MS-Deconv masses in PrSMs each with one mass shift.
