REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Mouse monoclonal anti-HLA-DR (cloneL243) | Sigma-Aldrich | Cat#SAB4700731 |
Mouse monoclonal anti-HLA-DR alpha chain (clone TAL.1B5) | DAKO | Cat#M0746; RRID: AB_2262753 |
Mouse monoclonal anti-DnaK (clone 8E2/2) | ENZO | Cat#ADI-SPA-880-F; RRID: AB_10619012 |
Goat polyclonal anti-Common Salmonella Antigens | KPL | Cat#01-91-99 |
Rabbit Monoclonal anti-GFP | Invitrogen | Cat#G10362 |
Mouse monoclonal anti anti-ubiquitin (clone P4D1) | Santa Cruz | Cat#sc-8017; RRID: AB_628423 |
Mouse monoclonal anti-tubulin | DSHB | Cat#E7 |
Rabbit polyclonal anti-actin | Sigma-Aldrich | Cat#A2066; RRID:AB_476693 |
Mouse monoclonal anti-CRISPR-Cas9 | Novus Biological | Cat#NBP2-36440 |
Mouse monoclonal anti-Golgin97 (clone CDF4) | eBioscience | Cat#14-9767-82 |
Mouse monoclonal anti-Transferrin receptor (H68.4) | Zymed (S. Meresse) | Cat#13-6800 |
Mouse monoclonal anti-FLAG (clone M2) | Merck | Cat#F3165-2MG |
Rabbit polyclonal anti-FLAG | Merck | Cat#F7425 |
Mouse monoclonal anti-HA11 (clone 16B12) | Biolegend | Cat#901502; RRID: AB_2565007 |
Rabbit polyclonal anti-TMEM127 | Bethyl laboratories | Cat#A303-450A; RRID: AB_10952702 |
Rabbit polyclonal anti-WWP2 | Abcam | Cat#ab103527; RRID: AB_10710285 |
Mouse monoclonal anti-MHCII-APC (clone M5/114.15.2) | Miltenyi Biotec | Cat#130-102-898; RRID: AB_2660057 |
Hamster monoclonal anti-CD11c-VioBlue (clone N418) | Miltenyi Biotec | Cat#130-102-797; RRID: AB_2660157 |
Rat monoclonal anti-CD4-PerCP-Cy5.5 (clone RM4-5) | BD Biosciences | Cat#550954; RRID: AB_393977 |
Hamster monoclonal anti-CD3ε-PE-Vio770 (145-2C11) | Miltenyi Biotec | Cat#130-102-794; RRID: AB_2660399 |
Bacterial and Virus Strains | ||
Salmonella enterica serovar Typhimurium 12023 | NCTC | NCTC 12023 |
Salmonella enterica serovar Typhimurium 12023 ΔsteD::km | Bayer-Santos et al., 2016 | N/A |
Salmonella enterica serovar Typhimurium 12023 ΔsteD::km + pSteD-2HA-SrcA | Godlee et al., 2019 | N/A |
Salmonella enterica serovar Typhimurium 12023 + pFCcGi | This study | N/A |
Salmonella enterica serovar Typhimurium 12023 ΔsteD::km + pFCcGi | This study | N/A |
Salmonella enterica serovar Typhimurium 12023 ΔsteD::km + pSteD-2HA-SrcA + pFCcGi | This study | N/A |
Salmonella enterica serovar Typhimurium 12023 ΔsteD::km + pSteDK24R-2HA-SrcA | This study | N/A |
Salmonella enterica serovar Typhimurium 12023 ΔsteD::SteDK24R | This study | N/A |
E. coli DH5α | Thermo Fisher Scientific | Cat#18265017 |
Chemicals, Peptides, and Recombinant Proteins | ||
Chloroquine diphosphate salt | Sigma-Aldrich | Cat#C6628-25G; CAS: 50-63-5 |
Enzymes for UbiCRest | Hospenthal et al., 2015 | N/A |
Blasticidin S | Merck | Cat#15205-25MG; CAS: 3513-03-9 |
Puromycin dihydrochloride | Sigma-Aldrich | Cat#P8833-25MG; CAS: 58-58-2 |
Carbenicillin disodium salt | Sigma-Aldrich | Cat#C1389-5g; CAS: 4800-94-6 |
Chloramphenicol | Merck | Cat#C0378-25G; CAS: 56-75-7 |
Kanamycin sulfate from Streptomyces kanamyceticus | Sigma-Aldrich | Cat#K1377-5g; CAS: 25389-94-0 |
5(6)-Carboxyfluorescein diacetate N-succinimidyl ester | Sigam-Aldrich | Cat#21888-25MG-F; CAS: 150347-59-4 |
Ovalbumin (323-339) (chicken, Japanese quail) | Sigam-Aldrich | Cat#O1641-1MG |
Experimental Models: Cell Lines | ||
Hek293T | Provided by F. Randow | N/A; RRID: CVCL_0063 |
Hybridoma L243 | Provided by S. Meresse | N/A; RRID: CVCL_4533 |
MelJuSo | Provided by J. Neefjes | N/A; RRID: CVCL_1403 |
MelJuSo CRISPR/Cas9 MARCH8 KO | This study | N/A |
MelJuSo CRISPR/Cas9 TMEM127 KO | This study | N/A |
MelJuSo CRISPR/Cas9 WWP2 KO | This study | N/A |
MutuDCs | Provided by A. Orbea | Fuertes Marraco et al., 2012 |
MutuDCs CRISPR/Cas9 MARCH1 KO | Provided by J. Mintern | Wilson et al., 2018 |
MutuDCs CRISR/Cas9 TMEM127 KO | This study | N/A |
MutuDCs CRISR/Cas9 WWP2 KO | This study | N/A |
Experimental Models: Organisms/Strains | ||
OT-II mice | Charles River | C57BL/6-Tg(TcraTcrb)425Cbn/Crl; RRID: IMSR_CRL:643 |
Oligonucleotides | ||
See Table S2 for primer sequences | N/A | N/A |
Recombinant DNA | ||
Plasmid: GFP-SteD | Bayer-Santos et al, 2016 | N/A |
Plasmid: pMD-GAGPOL | Provided by F. Randow | Randow and Sale, 2006 |
Plasmid: VSVG | Provided by F. Randow | Randow and Sale, 2006 |
Plasmid: lentiCas9-Blast |
Sanjana et al, 2014 Gift from Feng Zeng |
Addgene Plasmid #52962 |
Plasmid: psPAX2 | Gift from Didier Trono | Addgene Plasmid #12260 |
Plasmid: pMD2.G | Gift from Didier Trono | Addgene Plasmid #12259 |
Plasmid: lentiguide-puro |
Sanjana et al, 2014 Gift from Feng Zhang |
Addgene Plasmid #52963 |
Pooled plasmid library: Human CRISPR knockout Pooled Library (GeCKO v2) |
Sanjana et al., 2014 Gift from Feng Zhang |
Addgene Plasmid #1000000048 |
WWP2 gene sequence | Genscript | OHu14116 |
TMEM127 gene sequence | genscript | OHu10702 |
Software and Algorithms | ||
Biopython | Biopython | https://biopython.org |
Count_spacers.py | Sanjana et al, 2014 | https://github.com/fengzhanglab/Screening_Protocols_manuscript/blob/master/count_spacers.py |
CRISPRAnalyzer | CRISPRAnalyzeR | http://crispr-analyzer.dkfz.de/ |
CRISPR Design Tool | Dharmacon | https://horizondiscovery.com/en/products/tools/CRISPR-Design-Tool |
Prism v8 | GraphPad | https://www.graphpad.com/scientific-software/prism/ |
FIJI | ImageJ | https://fiji.sc/ |
Coloc 2 ImageJ plugin | ImageJ | http://imagej.net/Coloc_2 |
Image Lab | BioRad | https://www.bio-rad.com/en-uk/product/image-lab-software?ID=KRE6P5E8Z |
FlowJo v10 | BD Life Sciences | https://www.flowjo.com/ |
Other | ||
Laser Scanning Microscope 710 | Zeiss | N/A |
BD LSRFortessa™ | BD Biosciences | N/A |
BD FACSAria™ III | BD Biosciences | N/A |
Dionex Ultimate 3000 HPLC system | Thermo Fisher Scientific | N/A |
Q Exactive™ | Thermo Fisher Scientific | N/A |