Figure 5.

Bioinformatics prediction of the virulence gene repertoires of P. savastanoi strains using PIFAR. Black boxes and white boxes, presence or absence, respectively, of the indicated gene or gene set; asterisks, genes not found in the genome but identified by PCR; grey boxes, partial codification of core genes; striped boxes, genes not found in the assembly but found in the unassembled reads. MDR, multidrug resistance transporter; ACR, acridine-like transporter from the resistance/nodulation/cell division (RND) family; SMR, small multidrug transporter family; MATE, multidrug and toxic compound extrusion family; OEP, outer membrane efflux protein (RND family); attC and attG, attachment gene homologs (Agrobacterium tumefaciens); xadM, adhesion gene homolog (Xanthomonas oryzae); Cellulose, cellulose synthase; Hema, hemagglutinin-repeat protein; Usher, outer membrane usher protein; fimbrial, fimbrial protein. T-PAI, canonical tripartite T3SS; R-PAI, rhizobial T3SS; T4SS, type IV secretion system; T6SS, type VI secretion system. WHOP, genomic island carrying four operons and other genes involved in degradation of phenolics (Caballo-Ponce et al., 2017b).