Skip to main content
. 2020 Jul 2;11:973. doi: 10.3389/fpls.2020.00973

Table 1.

General genome features of Pseudomonas savastanoi strains isolated from woody host.

Pathovar/Strain a Genome size (Mb) G+C content (%) Number of genes Protein-coding sequences Contigs Coverage Accession number d Reference
pv. fraxini
 NCPPB 1006 5.89 58.1 5584 5054 222 250× NZ_NIAW00000000 This study
 ICMP 7711PT b 6.02 57.9 5784 5155 481 68× NZ_LLJL00000000 Thakur et al., 2016
 CFBP 5062PT b 6.26 58.0 5828 5430 330 78× NZ_LIIC00000000 Nowell et al., 2016
 ICMP 9132 6.05 58.0 5766 5228 575 90.9× NZ_RBSB00000000 Dillon et al., 2019b
 ICMP 7712 5.92 58.1 5583 5091 686 75.8× NZ_RBSC00000000 Dillon et al., 2019b
 ICMP 9129 5.99 58.1 5692 5163 588 105.1× NZ_RBSA00000000 Dillon et al., 2019b
pv. nerii
Psn23 5.84 58.1 5568 5018 229 250× NZ_NIAY00000000 This study
 ICMP 16943PT b 5.72 58.3 5465 4874 341 45.2× NZ_LJQW00000000 Thakur et al., 2016
 CFBP 5067PT b 5.79 58.2 5602 4965 242 54× NZ_LIHX00000000 Nowell et al., 2016
 ICMP 13781 6.05 57.9 5658 5658 811 35.7× RBTO00000000 Dillon et al., 2019b
 ICMP 16944 5.80 58.1 5479 4944 532 53.3× NZ_RBUB00000000 Dillon et al., 2019b
pv. retacarpa
 CECT 4861PT b 5.73 58.1 5516 4920 316 250× NZ_NBYW00000000 This study
 ICMP 16945PT b 5.67 58.1 5457 4686 510 45.3× NZ_LJRD00000000 Thakur et al., 2016
 ICMP 16946 5.72 57.9 5373 5373 1103 30.6× RBQM00000000 Dillon et al., 2019b
 ICMP 16947 5.79 58.1 5648 4972 564 46.5× NZ_RBNM00000000 Dillon et al., 2019b
pv. savastanoi
 NCPPB 3335 c 6.17 58.0 5916 5291 4 200× NZ_CP008742
FR820585
FR820586
FR820587
This study
Bardaji et al., 2011
 ICMP 4352PT 6.02 58.0 5773 5215 321 66.9× NZ_LJRJ00000000 Thakur et al., 2016
 DAPP-PG722 6.42 57.9 6309 5545 412 70× NZ_JOJV00000000 Moretti et al., 2014
 PseNe107 6.07 58.0 5793 5263 247 140× NZ_JYHF00000000 Bartoli et al., 2015
 ICMP 13519 6.26 57.9 6168 5507 426 90.6× NZ_RBNW00000000 Dillon et al., 2019b
 ICMP 1411 5.80 58.1 5680 5058 383 49.7× NZ_RBPF00000000 Dillon et al., 2019b
 0485_9* 5.94 57.9 5946 5946 1918 36.2× RBNY00000000 Dillon et al., 2019b
 ICMP 13786* 5.99 58.0 5719 5066 606 42.8× NZ_RBTN00000000 Dillon et al., 2019b
a

Shading indicates genomes excluded from bioinformatics analyses because of the availability of genomes of higher quality for the same strain. PT, pathotype strain.

b

ICMP 7711 and CFBP 5062; ICMP 16943 and CFBP 5067; CECT 4861 and ICMP 16945 correspond to the same P. savastanoi isolate obtained from two different collections ( Table 3 ).

c

NCPPP 3335 data include both the complete sequence of its chromosome (accession number NZ_CP008742.1) and those of its three native plasmids (pPsv48A, FR820585.2; pPsv48B, FR820586.1 and; pPsv48C, FR820587.2).

d

National Centre for Biotechnology Information1.

Asterisks indicate oleander strains included in pathovar Psv (see Figure 4 ).