Table 1.
Pathovar/Strain a | Genome size (Mb) | G+C content (%) | Number of genes | Protein-coding sequences | Contigs | Coverage | Accession number d | Reference |
---|---|---|---|---|---|---|---|---|
pv. fraxini | ||||||||
NCPPB 1006 | 5.89 | 58.1 | 5584 | 5054 | 222 | 250× | NZ_NIAW00000000 | This study |
ICMP 7711PT b | 6.02 | 57.9 | 5784 | 5155 | 481 | 68× | NZ_LLJL00000000 | Thakur et al., 2016 |
CFBP 5062PT b | 6.26 | 58.0 | 5828 | 5430 | 330 | 78× | NZ_LIIC00000000 | Nowell et al., 2016 |
ICMP 9132 | 6.05 | 58.0 | 5766 | 5228 | 575 | 90.9× | NZ_RBSB00000000 | Dillon et al., 2019b |
ICMP 7712 | 5.92 | 58.1 | 5583 | 5091 | 686 | 75.8× | NZ_RBSC00000000 | Dillon et al., 2019b |
ICMP 9129 | 5.99 | 58.1 | 5692 | 5163 | 588 | 105.1× | NZ_RBSA00000000 | Dillon et al., 2019b |
pv. nerii | ||||||||
Psn23 | 5.84 | 58.1 | 5568 | 5018 | 229 | 250× | NZ_NIAY00000000 | This study |
ICMP 16943PT b | 5.72 | 58.3 | 5465 | 4874 | 341 | 45.2× | NZ_LJQW00000000 | Thakur et al., 2016 |
CFBP 5067PT b | 5.79 | 58.2 | 5602 | 4965 | 242 | 54× | NZ_LIHX00000000 | Nowell et al., 2016 |
ICMP 13781 | 6.05 | 57.9 | 5658 | 5658 | 811 | 35.7× | RBTO00000000 | Dillon et al., 2019b |
ICMP 16944 | 5.80 | 58.1 | 5479 | 4944 | 532 | 53.3× | NZ_RBUB00000000 | Dillon et al., 2019b |
pv. retacarpa | ||||||||
CECT 4861PT b | 5.73 | 58.1 | 5516 | 4920 | 316 | 250× | NZ_NBYW00000000 | This study |
ICMP 16945PT b | 5.67 | 58.1 | 5457 | 4686 | 510 | 45.3× | NZ_LJRD00000000 | Thakur et al., 2016 |
ICMP 16946 | 5.72 | 57.9 | 5373 | 5373 | 1103 | 30.6× | RBQM00000000 | Dillon et al., 2019b |
ICMP 16947 | 5.79 | 58.1 | 5648 | 4972 | 564 | 46.5× | NZ_RBNM00000000 | Dillon et al., 2019b |
pv. savastanoi | ||||||||
NCPPB 3335 c | 6.17 | 58.0 | 5916 | 5291 | 4 | 200× |
NZ_CP008742 FR820585 FR820586 FR820587 |
This study |
Bardaji et al., 2011 | ||||||||
ICMP 4352PT | 6.02 | 58.0 | 5773 | 5215 | 321 | 66.9× | NZ_LJRJ00000000 | Thakur et al., 2016 |
DAPP-PG722 | 6.42 | 57.9 | 6309 | 5545 | 412 | 70× | NZ_JOJV00000000 | Moretti et al., 2014 |
PseNe107 | 6.07 | 58.0 | 5793 | 5263 | 247 | 140× | NZ_JYHF00000000 | Bartoli et al., 2015 |
ICMP 13519 | 6.26 | 57.9 | 6168 | 5507 | 426 | 90.6× | NZ_RBNW00000000 | Dillon et al., 2019b |
ICMP 1411 | 5.80 | 58.1 | 5680 | 5058 | 383 | 49.7× | NZ_RBPF00000000 | Dillon et al., 2019b |
0485_9* | 5.94 | 57.9 | 5946 | 5946 | 1918 | 36.2× | RBNY00000000 | Dillon et al., 2019b |
ICMP 13786* | 5.99 | 58.0 | 5719 | 5066 | 606 | 42.8× | NZ_RBTN00000000 | Dillon et al., 2019b |
Shading indicates genomes excluded from bioinformatics analyses because of the availability of genomes of higher quality for the same strain. PT, pathotype strain.
ICMP 7711 and CFBP 5062; ICMP 16943 and CFBP 5067; CECT 4861 and ICMP 16945 correspond to the same P. savastanoi isolate obtained from two different collections ( Table 3 ).
NCPPP 3335 data include both the complete sequence of its chromosome (accession number NZ_CP008742.1) and those of its three native plasmids (pPsv48A, FR820585.2; pPsv48B, FR820586.1 and; pPsv48C, FR820587.2).
National Centre for Biotechnology Information1.
Asterisks indicate oleander strains included in pathovar Psv (see Figure 4 ).