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Time-lagged t-SNE (t-t-SNE) applied on 200 ns simulation of alanine dipeptide in water. Conformations sampled in the simulations were projected into the space of Ramachandran torsions ϕ and ψ (A,E), TICA coordinates (B,F), t-SNE (C,G) and time-lagged t-SNE (D,H). Points are colored by Ramachandran torsion ϕ (A–D) and ψ (E–H).
