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. 2020 May 30;9(6):292. doi: 10.3390/antibiotics9060292

Table 2.

Calculated ADMET (Absorption, Distribution, Metabolism, Elimination and Toxicity) properties of PM-C, 1, 2, and 5a-d.

Heading PM-C 1 2 5a 5b 5c 5d Range 95% of Drugs
cLogPo/w 4.476 4.889 5.637 2.496 3.200 3.132 3.746 −2.0/6.5
cLogS −5.031 −6.250 −6.331 −4.126 −4.744 −4.945 −5.419 −6.5/0.5
cLogKhsa 0.364 0.568 0.628 0.108 0.209 0.240 0.319 −1.5/1.5
cLogBB 0.219 0.376 1.039 −1.138 −0.681 −0.890 −0.444 −3.0/1.2
CNS Activity + + ++ − − +/− +/− − − (inactive)
++ (active)
cLogHERG −4.511 −4.436 −4.259 −4.586 −4.583 −4.627 −4.515 concern below −5
cPCaco 1298 1338 7162 131 277 175 344 <25 poor
>500 great
clogKp −2.518 −2.594 −1.215 −4.245 −3.667 −4.111 −3.617 Kp in cm/hr
Percent Human Oral Absorption ±20% 100 100 100 79 89 85 94 <25% poor
Jorgensen Rule 0 1 1 0 0 0 0 maximum 3
Lipinski Rule 0 1 2 0 0 0 0 maximum 4
# Stars (violation of the 95% range) 2 2 2 0 1 1 1 0-5

cLogPo/w: predicted octanol/water partition coefficient. cLogS: predicted aqueous solubility, log S. S in mol dm−3 is the concentration of the solute in a saturated solution that is in equilibrium with the crystalline solid. cLogKhsa: prediction of binding to human serum albumin. cLogBB: predicted brain/blood partition coefficient. Note: Predictions are for orally delivered drugs. CNS Activity: predicted central nervous system activity on a−2 (inactive) to +2 (active) scale. cLogHERG: predicted IC50 value for blockage of HERG K+ channels. cPCaco: Predicted apparent Caco-2 cell permeability in nm/sec; Caco-2 cells are a model for the gut-blood barrier. Predictions are for non-active transport. cLogKp: predicted skin permeability, log K. Percent Human-Oral Absorption ±20%: predicted human oral absorption on 0 to 100% scale; the prediction is based on a quantitative multiple linear regression model; the assessment uses a knowledge-based set of rules, including number of metabolites, number of rotatable bonds, logP, solubility, and cell permeability. Jorgensen Rule or Rule of Three: number of violations of Jorgensen’s rule of three. The three rules are: cLogS > −5.7, cPCaco > 22 nm/s, # Primary Metabolites < 7. Compounds with fewer (and preferably no) violations of these rules are more likely to be orally available. Lipinski Rule or Rule of Five: number of violations of Lipinski’s rule of five. The four rules are: mol_MW < 500, cLogPo/w < 5, HB donor ≤ 5, HB acceptor ≤ 10. Compounds that satisfy these rules are considered drug-like. # Stars (violation of the 95% range): number of property or descriptor values that are outside the 95% range of similar values for known drugs. A large number of stars suggests that a molecule is less drug-like than molecules with few stars.