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. 2020 Jun 26;5(2):105. doi: 10.3390/tropicalmed5020105

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© 2020 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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Phylogenetic reconstruction and positioning of CHIKV genome obtained in this study using maximum likelihood. (a) Full phylogeny including all available West African, East/Central/South African (ECSA)—Indian Ocean lineages and Asian/Caribbean using complete and draft genomes >8 kb. (b) Phylogenetic analysis focusing on Brazilian genomes of a subset of ECSA and Asian/Caribbean CHIKV genomic sequences from the full CHIKV tree. (c) Distribution of the number of CHIKV genomes sequenced per state. State colors follow tip colors in panel B.