Table 2B. Common exon variants in the TMPRSS2 gene in different populations.
Variant ID | Consequence | A1/N alleles ITA | Freq ITA | A1/N alleles EUR | Freq EUR | A1/N alleles EAS | Freq EAS | ITA Vs EUR | ITA Vs EAS | EUR Vs EAS |
rs2298659 | p.Gly259Gly | 1388/7968 | 0.174 | 28744/122880 | 0.234 | 5179/19478 | 0.266 | P<2.2e-16 | P<2.2e-16 | P<2.2e-16 |
rs17854725 | p.Ile256Ile | 4131/7968 | 0.518 | 67712/122814 | 0.551 | 2544/19604 | 0.130 | P=1.16e-08 | P<2.2e-16 | P<2.2e-16 |
rs12329760 | p.Val160Met | 1387/7968 | 0.174 | 29831/128604 | 0.232 | 7651/19934 | 0.384 | P<2.2e-16 | P<2.2e-16 | P<2.2e-16 |
rs3787950 | p.Thr75Thr | 889/7968 | 0.112 | 9864/127666 | 0.077 | 2905/19600 | 0.148 | P<2.2e-16 | P=1.39e-15 | P<2.2e-16 |
Total allele counts, carrier allele counts, and carrier frequencies are shown; only variants with MAF more than 5% were considered.
P values are presented as non-corrected; the number of statistical comparisons performed in Tables 1A, 1B, 2A, and 2B is collectively of 24, thus lowering the threshold for significance at P=0.0021 (Bonferroni threshold). Significant P values are indicated in bold.
A1: alleles carrying variants; Freq A1: frequency of A1 allele; ITA: Italian population; EUR: European population; EAS: East Asian population.