Table 2C. eQTL variants in the TMPRSS2 gene in different populations.
Variant ID | P GTEx | NES GTEx | Freq ITA | Freq EUR | Freq EAS | ITA vs EUR | ITA vs EAS | EUR vs EAS |
rs463727 | 5.0e-10 | 0.12 | 0.44 | 0.46 | 0.0051 | P=0.038 | P<2.2e-16 | P<2.2e-16 |
rs2070788 | 8.9e-9 | -0.11 | 0.55 | 0.53 | 0.66 | P=0.003 | P=4.7e-15 | P<2.2e-16 |
rs9974589 | 7.4e-9 | -0.12 | 0.55 | 0.53 | 0.66 | P=0.002 | P=3.3e-15 | P<2.2e-16 |
rs34624090 | 9.2e-9 | 0.12 | 0.43 | 0.45 | 0.0051 | P=0.005 | P<2.2e-16 | P<2.2e-16 |
rs7364083 | 3.3e-9 | -0.12 | 0.56 | 0.53 | 0.65 | P=8.7e-05 | P=1.9e-10 | P<2.2e-16 |
rs55964536 | 1.9e-9 | 0.12 | 0.46 | 0.49 | 0.0045 | P=4.6e-04 | P<2.2e-16 | P<2.2e-16 |
rs734056 | 1.3e-9 | 0.12 | 0.47 | 0.49 | 0.0051 | P=0.030 | P<2.2e-16 | P<2.2e-16 |
rs4290734 | 8.3e-10 | 0.12 | 0.47 | 0.49 | 0.0051 | P=0.019 | P<2.2e-16 | P<2.2e-16 |
rs34783969 | 3.9e-10 | 0.12 | 0.47 | 0.49 | 0.0051 | P=0.027 | P<2.2e-16 | P<2.2e-16 |
rs11702475 | 8.4e-10 | 0.12 | 0.47 | 0.49 | 0.0046 | P=0.015 | P<2.2e-16 | P<2.2e-16 |
rs35899679 | 7.8e-9 | 0.11 | 0.44 | 0.46 | 0.0051 | P=0.004 | P<2.2e-16 | P<2.2e-16 |
rs35041537 | 3.6e-9 | 0.12 | 0.44 | 0.47 | 0.0051 | P=8.6e-04 | P<2.2e-16 | P<2.2e-16 |
P values are presented as non-corrected; the number of statistical comparisons performed in Table 2C is collectively of 36, thus lowering the threshold for significance at P=0.0013 (Bonferroni threshold). Significant P values are indicated in bold.
NES: normalized effect size; Freq: frequency of the minor allele; ITA: Italian population; EUR: European population; EAS: East Asian population.