Table 2.
Information on the endogenous gammaretroviruses of bats detected in this study
Species | Scaffold name | ERV group | Size (nt) | LTR similarity (%) | gag | pol | env |
AAPE02061792 | B | 8 727 | 98.5 | Intact | Defective* | Intact | |
AAPE02063846 | A | 8 497 | 99.2 | Intact | Defective* | Defective* | |
AAPE02065460 | B | 7 454 | 92.1 | Defective | Defective | Absent | |
AAPE02065562 | A | 8 297 | 99.2 | Defective | Defective | Defective | |
GL429769 | C | 8 396 | 98.6 | Defective | Defective | Defective | |
GL429771 | B | 7 884 | 99.5 | Intact | Intact | Absent | |
GL429779 | B | 7 497 | 99.1 | Defective | Intact | Absent | |
GL429786 | C | 8 004 | 97.9 | Defective | Defective† | Defective | |
GL429787 | B | 8 044 | 99.0 | Defective† | Defective | Absent | |
GL429923 | C | 8 435 | 94.1 | Defective | Defective | Defective | |
GL430060 | B | 8 467 | 90.7 | Defective | Defective | Defective | |
GL430524 | B | 7 739 | 98.2 | Defective | Defective | Absent | |
GL430941 | B | 12 211 | 91.0 | Defective | Defective | Defective | |
GL431000 | C | 8 419 | 90.8 | Defective | Defective | Defective | |
Scaffold_12382 | C | 14 402 | 89.4 | Defective | Defective | Absent | |
Scaffold_16080 | C | 8 427 | 97.0 | Defective | Defective | Defective |
ORF intact except for a few minor in-frame stop codons.
ORF intact except for a stop codon and/or frame shift.