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. 2020 May 1;31(10):1085–1102. doi: 10.1091/mbc.E20-01-0040

TABLE 1:

Biochemical reactions and parameter values for the polarity module.

Biochemical reactions
Reaction Rate constant Value Reference
Inline graphic k1a 10 s−1 (Goryachev and Pokhilko, 2008; Savage et al., 2012)
Inline graphic k1b 10 s−1 (Goryachev and Pokhilko, 2008; Savage et al., 2012)
Inline graphic k2a 0.16 μM−1 s−1 (Savage et al., 2012)
Inline graphic k2b 0.63 s−1 (Savage et al., 2012)
Inline graphic k3 0.35 μM−1 s−1 (Savage et al., 2012)
Inline graphic k4a 10 μM−1 s−1 (Goryachev and Pokhilko, 2008; Savage et al., 2012)
Inline graphic k4b 10 s−1 (Savage et al., 2012)
Inline graphic k5a 144 s−1 (Dyer et al., 2013)
Inline graphic k5b 20.8 s−1 (Dyer et al., 2013)
Inline graphic k7 10 μM−1 s−1 (Dyer et al., 2013)
Model specifications
Parameter Value Comments Reference
Cell radius 2.5 μm (Savage et al., 2012)
Membrane to cytoplasm volume ratio (η) 0.01 (Savage et al., 2012)
Membrane diffusion constant 0.0045 μm2 s−1 (Dyer et al., 2013)
Cytoplasmic diffusion constant Assumed well-mixed (Savage et al., 2012)
Internal membrane diffusion constant Assumed well-mixed (Savage et al., 2012)
Mean [Cdc42] in cell 1 μM 39415 molecules in 65.4 μm3 (Goryachev and Pokhilko, 2008; Savage et al., 2012)
Mean [BemGEF] in cell 0.017 μM 670 molecules in 65.4 μm3 (Goryachev and Pokhilko, 2008; Savage et al., 2012)