TABLE 1:
Biochemical reactions and parameter values for the polarity module.
Biochemical reactions | |||
---|---|---|---|
Reaction | Rate constant | Value | Reference |
![]() |
k1a | 10 s−1 | (Goryachev and Pokhilko, 2008; Savage et al., 2012) |
![]() |
k1b | 10 s−1 | (Goryachev and Pokhilko, 2008; Savage et al., 2012) |
![]() |
k2a | 0.16 μM−1 s−1 | (Savage et al., 2012) |
![]() |
k2b | 0.63 s−1 | (Savage et al., 2012) |
![]() |
k3 | 0.35 μM−1 s−1 | (Savage et al., 2012) |
![]() |
k4a | 10 μM−1 s−1 | (Goryachev and Pokhilko, 2008; Savage et al., 2012) |
![]() |
k4b | 10 s−1 | (Savage et al., 2012) |
![]() |
k5a | 144 s−1 | (Dyer et al., 2013) |
![]() |
k5b | 20.8 s−1 | (Dyer et al., 2013) |
![]() |
k7 | 10 μM−1 s−1 | (Dyer et al., 2013) |
Model specifications | |||
---|---|---|---|
Parameter | Value | Comments | Reference |
Cell radius | 2.5 μm | (Savage et al., 2012) | |
Membrane to cytoplasm volume ratio (η) | 0.01 | (Savage et al., 2012) | |
Membrane diffusion constant | 0.0045 μm2 s−1 | (Dyer et al., 2013) | |
Cytoplasmic diffusion constant | Assumed well-mixed | (Savage et al., 2012) | |
Internal membrane diffusion constant | Assumed well-mixed | (Savage et al., 2012) | |
Mean [Cdc42] in cell | 1 μM | 39415 molecules in 65.4 μm3 | (Goryachev and Pokhilko, 2008; Savage et al., 2012) |
Mean [BemGEF] in cell | 0.017 μM | 670 molecules in 65.4 μm3 | (Goryachev and Pokhilko, 2008; Savage et al., 2012) |