Table 2. Polishing results for four Klebsiella pneumoniae isolates.

The columns list average identity rates for 1-to-1 best alignments of the polished assemblies to the finished sequences of the isolates. In bold we highlight the best result and any result within 0.01% of the best.

Isolate barcode	Illumina coverage depth	Canu+Nanopolish Initial (%)	POLCA (%)	Pilon (%)	Racon (%)	NextPolish (%)
01	60x	99.62	99.96	99.96	99.76	99.94
03	38x	99.01	99.89	99.86	99.88	99.90
04	44x	99.79	99.93	99.89	99.88	99.94
05	68x	99.35	99.98	99.97	99.68	99.98