KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Chemicals, Peptides, and Recombinant Proteins | ||
Rabbit muscle aldolase | Sigma Aldrich | 89933139 |
Deposited Data | ||
Raw, electron micrographs, T20S proteasome | Campbell et al. 2015 | EMPIAR-10025 |
Raw, electron micrographs, HA Trimer | Noble et al. 2018 | EMPIAR-10175 |
Raw, electron micrographs aldolase | This paper | EMPIAR-10379 |
Cryo-EM map of T20S proteasome (Figure 4D) | This paper | EMD-21491 |
Cryo-EM map of HA Trimer (Figure 5D) | This paper | EMD-21490 |
Cryo-EM map of aldolase (Figure 6D) | This paper | EMD-21492 |
Software and Algorithms | ||
Python | Anaconda | https://www.anaconda.com/distribution |
Leginon | Suloway et al., 2005 | https://emg.nysbc.org/redmine/projects/leginon |
Appion | Lander et al., 2009 | https://emg.nysbc.org/redmine/projects/appion |
CTFFIND4 | Rohou and Grigorieff, 2015 | http://grigoriefflab.janelia.org/ctffind4 |
MotionCor2 | Zheng et al., 2017 | https://emcore.ucsf.edu/ucsf-motioncor2 |
RELION3 | Zivanov et al., 2018 | https://www3.mrc-lmb.cam.ac.uk/relion |
UCSF Chimera | Goddard et al., 2007 | https://www.cgl.ucsf.edu/chimera |
cryoSPARC | Punjani et al., 2017 | https://cryosparc.com |
Tensorflow | Abadi et al. 2016 | https://www.tensorflow.org |
Other | ||
Vitrobot Mark IV | Thermo Fisher Scientific |